Search results
- 1.0543807 - MBÚ 2022 RIV GB eng J - Journal Article
Filandrová, Růžena - Vališ, Karel - Černý, Jiří - Chmelík, Josef - Slavata, Lukáš - Fiala, Jan - Rosůlek, Michal - Kavan, Daniel - Man, Petr - Chum, Tomáš - Cebecauer, Marek - Fabris, D. - Novák, Petr
Motif orientation matters: Structural characterization of TEAD1 recognition of genomic DNA.
Structure. Roč. 29, č. 4 (2021), s. 345-356. ISSN 0969-2126. E-ISSN 1878-4186
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015043
EU Projects: European Commission(XE) 823839 - EPIC-XS
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971 ; RVO:86652036 ; RVO:61388955
Keywords : TEAD1 * genomic DNA * M-CAT motifs * ChIP-qPCR * presence of M-CAT
OECD category: Biochemistry and molecular biology; Biophysics (BTO-N); Physical chemistry (UFCH-W)
Impact factor: 5.871, year: 2021
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/abs/pii/S0969212620304652?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0320930File Download Size Commentary Version Access 0543807preprint.pdf 5 2.2 MB Author´s preprint open-access - 2.0533337 - ÚOCHB 2021 RIV GB eng J - Journal Article
Lux, Vanda - Brouns, T. - Čermáková, Kateřina - Srb, Pavel - Fábry, M. - Mádlíková, Marcela - Hořejší, M. - Kukačka, Zdeněk - Novák, Petr - Kugler, Michael - Brynda, Jiří - DeRijck, J. - Christ, F. - Debyser, Z. - Veverka, Václav
Molecular Mechanism of LEDGF/p75 Dimerization.
Structure. Roč. 28, č. 12 (2020), s. 1288-1299. ISSN 0969-2126. E-ISSN 1878-4186
R&D Projects: GA ČR(CZ) GA16-06357S; GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LO1304; GA MŠMT(CZ) EF16_019/0000729; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : protein-protein interaction * mixed-lineage leukemia * epigenetics transcription * PSIP1 * domain swapping * eletrostatic stapling * paramagnetic NMR
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (MBU-M)
Impact factor: 5.006, year: 2020
Method of publishing: Limited access
https://doi.org/10.1016/j.str.2020.08.012
Permanent Link: http://hdl.handle.net/11104/0311763 - 3.0519095 - MBÚ 2020 RIV CH eng J - Journal Article
Slavata, Lukáš - Chmelík, Josef - Kavan, Daniel - Filandrová, Růžena - Fiala, Jan - Rosůlek, Michal - Mrázek, Hynek - Kukačka, Zdeněk - Vališ, Karel - Man, Petr - Miller, M. - McIntyre, W. - Fabris, D. - Novák, Petr
MS-Based Approaches Enable the Structural Characterization of Transcription Factor/DNA Response Element Complex.
Biomolecules. Roč. 9, č. 10 (2019), č. článku 535. E-ISSN 2218-273X
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LO1509
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS; European Commission(XE) 823839 - EPIC-XS; European Commission(CZ) FP7WeNMR-261572; European Commission(CZ) H2020 West-Life 675858
Institutional support: RVO:61388971
Keywords : transcription factor * protein * protein-nucleic acid cross-linking
OECD category: Biochemistry and molecular biology
Impact factor: 4.082, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2218-273X/9/10/535
Permanent Link: http://hdl.handle.net/11104/0304158File Download Size Commentary Version Access 163_MS-Based Approaches Enable the Structural Characterization.pdf 5 4 MB Publisher’s postprint require - 4.0518684 - MBÚ 2020 RIV CH eng J - Journal Article
Rosůlek, Michal - Darebná, Petra - Pompach, Petr - Slavata, Lukáš - Novák, Petr
Proteases Immobilization for In Situ Time-Limited Proteolysis on MALDI Chips.
Catalysts. Roč. 9, č. 10 (2019), č. článku 833. E-ISSN 2073-4344
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 823839 - EPIC-XS
Institutional support: RVO:61388971
Keywords : protease * enzyme * ambient ion landing
OECD category: Biochemistry and molecular biology
Impact factor: 3.520, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2073-4344/9/10/833
Permanent Link: http://hdl.handle.net/11104/0303757 - 5.0510318 - MBÚ 2020 RIV GB eng J - Journal Article
Zeman, Jakub - Itoh, Y. - Kukačka, Zdeněk - Rosůlek, Michal - Kavan, Daniel - Kouba, Tomáš - Jansen, Myrte Esmeralda - Mohammad, Mahabub Pasha - Novák, Petr - Valášek, Leoš Shivaya
Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes.
Nucleic Acids Research. Roč. 47, č. 15 (2019), s. 8282-8300. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA17-06238S; GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015043
EU Projects: European Commission(XE) 823839 - EPIC-XS; European Commission(CZ) EPIC-XS
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971
Keywords : initiation-factor 3 * rna recognition motif * start codon recognition
OECD category: Microbiology
Impact factor: 11.502, year: 2019
Method of publishing: Open access
https://academic.oup.com/nar/article/47/15/8282/5530675
Permanent Link: http://hdl.handle.net/11104/0300829File Download Size Commentary Version Access 128_Binding of eIF3 in complex with.pdf 5 15.8 MB Publisher’s postprint require - 6.0508013 - MBÚ 2020 RIV NL eng J - Journal Article
Hernychová, Lucie - Rosůlek, Michal - Kádek, Alan - Mareška, V. - Chmelík, Josef (ed.) - Adámková, Ljubina - Grobárová, Valeria - Šebesta, O. - Kukačka, Zdeněk - Skála, Kristián - Spiwok, V. - Černý, J. - Novák, Petr
The C-type lectin-like receptor Nkrp1b: Structural proteomics reveals features affecting protein conformation and interactions.
Journal of Proteomics. Roč. 196, MAR 30 (2019), s. 162-172. ISSN 1874-3919. E-ISSN 1876-7737
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) ED1.1.00/02.0109
Research Infrastructure: Czech-BioImaging - 90062
Institutional support: RVO:61388971
Keywords : Structural mass spectrometry * Chemical cross-linking * Ion mobility
OECD category: Microbiology
Impact factor: 3.509, year: 2019
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S187439191830397X?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0298974 - 7.0505686 - MBÚ 2020 RIV CH eng J - Journal Article
Adámková, Ljubina - Kvíčalová, Zuzana - Rozbeský, Daniel - Kukačka, Zdeněk - Adámek, David - Cebecauer, Marek - Novák, Petr
Oligomeric Architecture of Mouse Activating Nkrp1 Receptors on Living Cells.
International Journal of Molecular Sciences. Roč. 20, č. 8 (2019), č. článku 1884. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971 ; RVO:61388955
Keywords : Nkrp1 * dimerization * Forster resonance energy transfer
OECD category: Biochemistry and molecular biology; Physical chemistry (UFCH-W)
Impact factor: 4.556, year: 2019
Method of publishing: Open access
https://www.mdpi.com/1422-0067/20/8/1884
Permanent Link: http://hdl.handle.net/11104/0297120File Download Size Commentary Version Access 0505686.pdf 2 3 MB open access Publisher’s postprint open-access - 8.0505591 - MBÚ 2020 RIV CH eng J - Journal Article
Nováková, Jana - Talacko, P. - Novák, Petr - Vališ, Karel
The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells.
Cells. Roč. 8, č. 2 (2019), č. článku 191. E-ISSN 2073-4409
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LQ1604; GA MPO(CZ) EG17_107/0011449
Institutional support: RVO:61388971
Keywords : Hippo/MST1 * caspase * apoptosis
OECD category: Biochemistry and molecular biology
Impact factor: 4.366, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2073-4409/8/2/191
Permanent Link: http://hdl.handle.net/11104/0297061File Download Size Commentary Version Access 163_The MEK-ERK-MST1 Axis Potentiates the Activation.pdf 4 3.4 MB Publisher’s postprint require - 9.0491223 - ÚMG 2019 RIV GB eng J - Journal Article
Škerlová, Jana - Bláha, J. - Pachl, Petr - Hofbauerová, Kateřina - Kukačka, Zdeněk - Man, Petr - Pompach, Petr - Novák, Petr - Otwinowski, Z. - Brynda, Jiří - Vaněk, O. - Řezáčová, Pavlína
Crystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide.
FEBS Journal. Roč. 285, č. 3 (2018), s. 580-598. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LO1304; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) LQ1604; GA MŠMT LG14009; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LD15089; GA ČR(CZ) GA15-05677S; GA ČR(CZ) GA16-24309S; GA ČR(CZ) GA15-15181S
Institutional support: RVO:68378050 ; RVO:61388971
Keywords : active pocket * carbohydrate biotechnology * glycosylation * mass spectrometry * propeptide * X-ray crystallography
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (MBU-M)
Impact factor: 4.739, year: 2018
Permanent Link: http://hdl.handle.net/11104/0285263 - 10.0489608 - MBÚ 2019 RIV US eng J - Journal Article
Rozbeský, Daniel - Rosůlek, Michal - Kukačka, Zdeněk - Chmelík, Josef - Man, Petr - Novák, Petr
Impact of Chemical Cross-Linking on Protein Structure and Function.
Analytical Chemistry. Roč. 90, č. 2 (2018), s. 1104-1113. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) BM1403
EU Projects: European Commission(CZ) BM1403
Institutional support: RVO:61388971
Keywords : TRANSFORM MASS-SPECTROMETRY * DISTANCE GEOMETRY METHOD * TOP-DOWN APPROACH
OECD category: Biochemistry and molecular biology
Impact factor: 6.350, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284071File Download Size Commentary Version Access 163_Impact of Chemical Cross-Linking on Protein.pdf 3 5.5 MB Publisher’s postprint require