Search results
- 1.0570212 - BTÚ 2024 RIV GB eng J - Journal Article
Genova, M. - Gryčová, Lenka - Puttrich, Verena - Magiera, M. M. - Lánský, Zdeněk - Janke, C. - Braun, Marcus
Tubulin polyglutamylation differentially regulates microtubule-interacting proteins.
EMBO Journal. Roč. 42, č. 5 (2023). ISSN 0261-4189. E-ISSN 1460-2075
R&D Projects: GA ČR(CZ) GX19-27477X; GA ČR(CZ) GA22-11753S; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2018129; GA MŠMT(CZ) EF16_013/0001775
Institutional support: RVO:86652036
Keywords : katanin * kinesin-1 * microtubule-associated Tau * microtubules * polyglutamylation * tubulin posttranslational modifications
OECD category: Biochemistry and molecular biology
Impact factor: 11.4, year: 2022
Method of publishing: Open access
https://www.embopress.org/doi/full/10.15252/embj.2022112101
Permanent Link: https://hdl.handle.net/11104/0342621 - 2.0562970 - BTÚ 2023 RIV DK eng J - Journal Article
Adámková, Kristýna - Koval, Tomáš - Ostergaard, L. H. - Dušková, Jarmila - Malý, Martin - Švecová, Leona - Skálová, Tereza - Kolenko, Petr - Dohnálek, Jan
Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
Acta Crystallographica Section D-Biological Crystallography. Roč. 78, OCT 1 2022 (2022), s. 1194-1209. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2018127; GA ČR(CZ) GA20-12109S; GA MŠMT EF15_003/0000447
Institutional support: RVO:86652036
Keywords : S1 nuclease * Aspergillus oryzae * lattice-translocation defects * nucleotides * nucleosides * complexes
OECD category: Analytical chemistry
Impact factor: 2.2, year: 2022
Method of publishing: Limited access
https://scripts.iucr.org/cgi-bin/paper?S2059798322008397
Permanent Link: https://hdl.handle.net/11104/0340705 - 3.0560263 - BTÚ 2023 RIV GB eng J - Journal Article
Koval'ová, Terezia - Koval, Tomáš - Stránský, Jan - Kolenko, Petr - Dušková, Jarmila - Švecová, Leona - Vodickova, P. - Spiwok, V. - Benešová, E. - Lipovová, P. - Dohnálek, Jan
The first structure-function study of GH151 alpha-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity.
FEBS Journal. Roč. 289, č. 16 (2022), č. článku 16387. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT EF15_003/0000447; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2018127
Institutional support: RVO:86652036
Keywords : active site complementation * crystal structure * gh151 * alpha-l-fucosidase
OECD category: Biochemistry and molecular biology
Impact factor: 5.4, year: 2022
Method of publishing: Limited access
https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16387
Permanent Link: https://hdl.handle.net/11104/0340729 - 4.0543807 - MBÚ 2022 RIV GB eng J - Journal Article
Filandrová, Růžena - Vališ, Karel - Černý, Jiří - Chmelík, Josef - Slavata, Lukáš - Fiala, Jan - Rosůlek, Michal - Kavan, Daniel - Man, Petr - Chum, Tomáš - Cebecauer, Marek - Fabris, D. - Novák, Petr
Motif orientation matters: Structural characterization of TEAD1 recognition of genomic DNA.
Structure. Roč. 29, č. 4 (2021), s. 345-356. ISSN 0969-2126. E-ISSN 1878-4186
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015043
EU Projects: European Commission(XE) 823839 - EPIC-XS
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971 ; RVO:86652036 ; RVO:61388955
Keywords : TEAD1 * genomic DNA * M-CAT motifs * ChIP-qPCR * presence of M-CAT
OECD category: Biochemistry and molecular biology; Biophysics (BTO-N); Physical chemistry (UFCH-W)
Impact factor: 5.871, year: 2021
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/abs/pii/S0969212620304652?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0320930File Download Size Commentary Version Access 0543807preprint.pdf 5 2.2 MB Author´s preprint open-access - 5.0542184 - BTÚ 2022 RIV CH eng J - Journal Article
Pham, Phuong Ngoc - Huličiak, Maroš - Biedermannová, Lada - Černý, Jiří - Charnavets, Tatsiana - Fuertes, Gustavo - Herynek, Štěpán - Kolářová, Lucie - Kolenko, Petr - Pavlíček, Jiří - Zahradník, Jiří - Mikulecký, Pavel - Schneider, Bohdan
Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution.
Viruses. Roč. 13, č. 2 (2021), č. článku 190. E-ISSN 1999-4915
R&D Projects: GA ČR(CZ) GA16-20507S; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2018127
Institutional support: RVO:86652036
Keywords : directed evolution * protein scaffold * protein engineering * computational saturation * ribosome display * interleukin-10
OECD category: Virology
Impact factor: 5.818, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1999-4915/13/2/190
Permanent Link: http://hdl.handle.net/11104/0319662 - 6.0540782 - BTÚ 2021 RIV GB eng J - Journal Article
Kolenko, Petr - Svoboda, Jakub - Černý, Jiří - Charnavets, Tatsiana - Schneider, Bohdan
Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallographica Section D-Structural Biology. Roč. 76, DEC 1 2020 (2020), s. 1233-1243. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : DNA structure * noncanonical base pairs * T– * T mismatch
OECD category: Biochemical research methods
Impact factor: 7.652, year: 2020
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798320014151
Permanent Link: http://hdl.handle.net/11104/0318385 - 7.0539375 - BTÚ 2021 RIV CH eng J - Journal Article
Nováková, Zora - Bělousová, Nikola - Foss, C. A. - Havlínová, Barbora - Grešová, Markéta - Das, Gargi - Lisok, A. - Přáda, A. - Barinkova, M. - Hubálek, Martin - Pomper, M. - Bařinka, Cyril
Engineered Fragments of the PSMA-Specific 5D3 Antibody and Their Functional Characterization.
International Journal of Molecular Sciences. Roč. 21, č. 18 (2020), č. článku 6672. E-ISSN 1422-0067
R&D Projects: GA MŠMT(CZ) LTAUSA18196; GA MŠMT(CZ) LM2015043; GA ČR(CZ) GA18-04790S; GA MŠMT(CZ) LM2015062; GA MŠMT(CZ) EF16_013/0001775; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036 ; RVO:61388963
Keywords : single-chain fv * human prostate-cancer * membrane antigen psma * monoclonal-antibody
OECD category: Biochemistry and molecular biology; Analytical chemistry (UOCHB-X)
Impact factor: 5.924, year: 2020
Method of publishing: Open access
https://www.mdpi.com/1422-0067/21/18/6672
Permanent Link: http://hdl.handle.net/11104/0317066 - 8.0538485 - BTÚ 2021 RIV GB eng J - Journal Article
Andrikopoulos, Prokopis C. - Liu, Yingliang - Picchiotti, Alessandra - Lenngren, Nils - Kloz, Miroslav - Chaudhari, Aditya S. - Přeček, Martin - Rebarz, Mateusz - Andreasson, Jakob - Hajdu, Janos - Schneider, Bohdan - Fuertes, Gustavo
Femtosecond-to-nanosecond dynamics of flavin mononucleotide monitored by stimulated Raman spectroscopy and simulations.
Physical Chemistry Chemical Physics. Roč. 22, č. 12 (2020), s. 6538-6552. ISSN 1463-9076. E-ISSN 1463-9084
R&D Projects: GA MŠMT EF16_019/0000789; GA MŠMT EF15_003/0000447; GA MŠMT LQ1606; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2015047
Research Infrastructure: ELI Beamlines III - 90141
Institutional support: RVO:86652036 ; RVO:68378271
Keywords : adenine-dinucleotide fad * excited-state * electron-transfer
OECD category: Physical chemistry; Physical chemistry (FZU-D)
Impact factor: 3.676, year: 2020
Method of publishing: Limited access
https://pubs.rsc.org/en/content/articlelanding/2020/CP/C9CP04918E#!divAbstract
Permanent Link: http://hdl.handle.net/11104/0316287 - 9.0538228 - BTÚ 2021 RIV GB eng J - Journal Article
Kouba, T. - Koval, Tomáš - Sudzinová, Petra - Pospíšil, Jiří - Brezovská, Barbora - Hnilicová, Jarmila - Šanderová, Hana - Janoušková, Martina - Šiková, Michaela - Halada, Petr - Sýkora, Michal - Barvík, I. - Nováček, J. - Trundová, Mária - Dušková, Jarmila - Skálová, Tereza - Chon, U. R. - Murakami, K. S. - Dohnálek, Jan - Krásný, Libor
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase.
Nature Communications. Roč. 11, č. 1 (2020), č. článku 6419. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LM2015043; GA ČR(CZ) GA20-12109S; GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001776
Grant - others:OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447
Institutional support: RVO:86652036 ; RVO:61388971 ; RVO:68378050
Keywords : DNA-directed RNA Polymerase * Bacterial RNA * Sigma Factors
OECD category: Biophysics; Microbiology (MBU-M); Biochemistry and molecular biology (UMG-J)
Impact factor: 14.919, year: 2020
Method of publishing: Open access
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749160/
Permanent Link: http://hdl.handle.net/11104/0316062 - 10.0537260 - FZÚ 2021 RIV GB eng J - Journal Article
Polovinkin, Vitaly - Khakurel, Krishna - Babiak, M. - Angelov, Borislav - Schneider, Bohdan - Dohnálek, Jan - Andreasson, Jakob - Hajdu, Janos
Demonstration of electron diffraction from membrane protein crystals grown in a lipidic mesophase after lamella preparation by focused ion beam milling at cryogenic temperatures.
Journal of Applied Crystallography. Roč. 53, Dec (2020), s. 1416-1424. ISSN 0021-8898. E-ISSN 1600-5767
R&D Projects: GA MŠMT EF16_019/0000789; GA MŠMT EF15_003/0000447; GA MŠMT LQ1606; GA MŠMT(CZ) LM2015043
Grant - others:OP VVV - ADONIS(XE) CZ.02.1.01/0.0/0.0/16_019/0000789; OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447
Research Infrastructure: ELI Beamlines III - 90141
Institutional support: RVO:68378271 ; RVO:86652036
Keywords : electron diffraction * membrane protein crystals grown in meso * lipidic cubic phases * focused ion beam milling * lamella preparation
OECD category: Biophysics; Analytical chemistry (BTO-N)
Impact factor: 3.304, year: 2020
Method of publishing: Open access
Permanent Link: http://hdl.handle.net/11104/0314994File Download Size Commentary Version Access 0537260.pdf 0 1.4 MB CC licence Publisher’s postprint open-access