Search results
- 1.0583248 - BTÚ 2024 RIV US eng J - Journal Article
Husťáková, Blanka - Trundová, Mária - Adámková, Kristýna - Koval, Tomáš - Dušková, Jarmila - Dohnálek, Jan
A highly active S1-P1 nuclease from the opportunistic pathogen iStenotrophomonas maltophilia/i cleaves c-di-GMP.
FEBS Letters. Roč. 597, č. 16 (2023), s. 2103-2118. ISSN 0014-5793. E-ISSN 1873-3468
R&D Projects: GA ČR(CZ) GA20-12109S; GA MŠMT EF15_003/0000447
Research Infrastructure: CIISB III - 90242
Institutional support: RVO:86652036
Keywords : n-glycosylation * phosphodiesterase * mechanism * enzyme * S1-P1 nuclease
OECD category: Biophysics
Impact factor: 3.5, year: 2022
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/10.1002/1873-3468.14683
Permanent Link: https://hdl.handle.net/11104/0351252 - 2.0575356 - MBÚ 2024 RIV US eng J - Journal Article
Sudzinová, Petra - Šanderová, Hana - Koval, Tomáš - Skálová, Tereza - Borah, Nabajyoti - Hnilicová, Jarmila - Kouba, Tomáš - Dohnálek, Jan - Krásný, Libor
What the Hel: recent advances in understanding rifampicin resistance in bacteria.
FEMS Microbiology Reviews. Roč. 47, č. 6 (2023), č. článku fuac051. ISSN 0168-6445. E-ISSN 1574-6976
R&D Projects: GA ČR(CZ) GA20-12109S; GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT EF15_003/0000447
Institutional support: RVO:61388971 ; RVO:86652036 ; RVO:61388963
Keywords : rifampicin * antibiotics * resistance * bacteria * RNA polymerase * HelD * HelR
OECD category: Microbiology; Microbiology (BTO-N); Biochemistry and molecular biology (UOCHB-X)
Impact factor: 11.3, year: 2022
Method of publishing: Open access
https://academic.oup.com/femsre/advance-article/doi/10.1093/femsre/fuac051/6957393?login=true
Permanent Link: https://hdl.handle.net/11104/0345143File Download Size Commentary Version Access 2023_Sudzinova_FEMS Microbiol Rev_HelD.pdf 1 3.7 MB Author´s preprint require - 3.0574533 - BTÚ 2024 RIV US eng J - Journal Article
Malý, Martin - Kolenko, Petr - Stránský, Jan - Švecová, Leona - Dušková, Jarmila - Koval, Tomáš - Skálová, Tereza - Trundová, Mária - Adámková, Kristýna - Černý, Jiří - Božíková, Paulina - Dohnálek, Jan
Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia.
Acta Crystallographica Section F-Structural Biology and Crystallization Communications. Roč. 79, JUL 2023 (2023), s. 180-192. ISSN 1744-3091. E-ISSN 2053-230X
R&D Projects: GA MŠMT EF16_019/0000778; GA MŠMT EF15_003/0000447; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF18_046/0015974
Research Infrastructure: CIISB III - 90242
Institutional support: RVO:86652036
Keywords : FAD-dependent monooxygenases * tetracycline * antibiotic resistance
OECD category: Biochemistry and molecular biology
Impact factor: 0.9, year: 2022
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2053230X23005381
Permanent Link: https://hdl.handle.net/11104/0346203 - 4.0562970 - BTÚ 2023 RIV DK eng J - Journal Article
Adámková, Kristýna - Koval, Tomáš - Ostergaard, L. H. - Dušková, Jarmila - Malý, Martin - Švecová, Leona - Skálová, Tereza - Kolenko, Petr - Dohnálek, Jan
Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
Acta Crystallographica Section D-Biological Crystallography. Roč. 78, OCT 1 2022 (2022), s. 1194-1209. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2018127; GA ČR(CZ) GA20-12109S; GA MŠMT EF15_003/0000447
Institutional support: RVO:86652036
Keywords : S1 nuclease * Aspergillus oryzae * lattice-translocation defects * nucleotides * nucleosides * complexes
OECD category: Analytical chemistry
Impact factor: 2.2, year: 2022
Method of publishing: Limited access
https://scripts.iucr.org/cgi-bin/paper?S2059798322008397
Permanent Link: https://hdl.handle.net/11104/0340705 - 5.0561062 - BTÚ 2023 RIV GB eng J - Journal Article
Blaha, J. - Skálová, Tereza - Kalousková, B. - Skořepa, O. - Cmunt, D. - Grobárová, V. - Pažický, S. - Polachova, E. - Abreu, C. - Stránský, Jan - Koval, Tomáš - Dušková, Jarmila - Zhao, Y. - Harlos, K. - Hašek, Jindřich - Dohnálek, Jan - Vaněk, O.
Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse.
Nature Communications. Roč. 13, č. 1 (2022), č. článku 5022. E-ISSN 2041-1723
R&D Projects: GA ČR(CZ) GA15-15181S; GA ČR(CZ) GA18-10687S; GA MŠMT EF15_003/0000447; GA MŠMT(CZ) LM2018127
Institutional support: RVO:86652036
Keywords : HIGH-LEVEL EXPRESSION * TRANSCRIPT 1 LLT1 * T-CELLS
OECD category: Immunology
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-022-32577-6
Permanent Link: https://hdl.handle.net/11104/0340821 - 6.0560263 - BTÚ 2023 RIV GB eng J - Journal Article
Koval'ová, Terezia - Koval, Tomáš - Stránský, Jan - Kolenko, Petr - Dušková, Jarmila - Švecová, Leona - Vodickova, P. - Spiwok, V. - Benešová, E. - Lipovová, P. - Dohnálek, Jan
The first structure-function study of GH151 alpha-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity.
FEBS Journal. Roč. 289, č. 16 (2022), č. článku 16387. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT EF15_003/0000447; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2018127
Institutional support: RVO:86652036
Keywords : active site complementation * crystal structure * gh151 * alpha-l-fucosidase
OECD category: Biochemistry and molecular biology
Impact factor: 5.4, year: 2022
Method of publishing: Limited access
https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16387
Permanent Link: https://hdl.handle.net/11104/0340729 - 7.0558380 - BTÚ 2023 RIV US eng J - Journal Article
Dohnálek, Jan - Skálová, Tereza
C-type lectin-(like) fold-Protein-protein interaction patterns and utilization.
Biotechnology Advances. Roč. 58, SEP 2022 (2022), č. článku 107944. ISSN 0734-9750. E-ISSN 1873-1899
R&D Projects: GA ČR(CZ) GA18-10687S; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT EF15_003/0000447
Institutional support: RVO:86652036
Keywords : C-type lectin * C-type lectin-like * Protein-protein interaction
OECD category: Environmental biotechnology
Impact factor: 16, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0734975022000404?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340739 - 8.0550734 - BTÚ 2022 RIV CH eng J - Journal Article
Dohnálek, Jan - Dušková, Jarmila - Tishchenko, Galina - Kolenko, Petr - Skálová, Tereza - Novák, Petr - Fejfarová, Karla - Šimůnek, Jiří
Chitinase Chit62J4 essential for chitin processing by human microbiome bacterium clostridium paraputrificum J4.
Molecules. Roč. 26, č. 19 (2021), č. článku 5978. E-ISSN 1420-3049
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR(CZ) GA20-12109S
Research Infrastructure: CIISB - 90043; CIISB II - 90127
Institutional support: RVO:86652036 ; RVO:61389013 ; RVO:61388971 ; RVO:67985904
Keywords : Adaptation to the environment * Chitinase * Exochitinase * Glycosyl hydrolase family 18 * Human commensal bacterium
OECD category: Biochemistry and molecular biology; Polymer science (UMCH-V)
Impact factor: 4.927, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1420-3049/26/19/5978
Permanent Link: http://hdl.handle.net/11104/0326061 - 9.0550569 - BTÚ 2022 RIV GB eng J - Journal Article
Malý, Martin - Diederichs, K. - Dohnálek, Jan - Kolenko, Petr
PAIREF: paired refinement also for Phenix users.
Acta Crystallographica Section F-Structural Biology and Crystallization Communications. Roč. 77, JUL 2021 (2021), s. 226-229. ISSN 1744-3091. E-ISSN 2053-230X
R&D Projects: GA ČR(CZ) GA18-10687S
Grant - others:OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447; GA MŠk(CZ) CZ.1.05/1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : x-ray-diffraction * refmac5 * macromolecular crystallography * paired refinement
OECD category: Biochemistry and molecular biology
Impact factor: 1.072, year: 2021
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2053230X21006129
Permanent Link: http://hdl.handle.net/11104/0328911 - 10.0550566 - BTÚ 2022 RIV GB eng J - Journal Article
Kolenko, Petr - Stránský, Jan - Koval, Tomáš - Malý, Martin - Dohnálek, Jan
SHELIXIR: automation of experimental phasing procedures using SHELXC/D/E.
Journal of Applied Crystallography. Roč. 54, č. 3 (2021), s. 996-1005. ISSN 0021-8898. E-ISSN 1600-5767
R&D Projects: GA MŠMT(CZ) LM2018127
Grant - others:Ministerstvo průmyslu a obchodu - GA MPO(CZ) CZ.02.1.01/0.0/0.0/16_019/0000778; OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447; GA MŠk(CZ) CZ.1.05/1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : x-ray * crystal-structure * data processing * experimental phasing
OECD category: Analytical chemistry
Impact factor: 4.868, year: 2021
Method of publishing: Limited access
https://scripts.iucr.org/cgi-bin/paper?S1600576721002454
Permanent Link: http://hdl.handle.net/11104/0328936