Search results
- 1.0578225 - ÚFCH JH 2025 RIV NL eng J - Journal Article
Saija, Maria Chiara - Melcrová, Adéla - Pajerski, Wojciech - Schachter, I. - Javanainen, M. - Cebecauer, Marek - Cwiklik, Lukasz
Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study.
Biophysical Chemistry. Roč. 304, JAN 2024 (2024), č. článku 107124. ISSN 0301-4622. E-ISSN 1873-4200
R&D Projects: GA ČR(CZ) GX19-26854X
Institutional support: RVO:61388955
Keywords : PAG * membranes * Palmitoylation
OECD category: Physical chemistry
Impact factor: 3.8, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0301462223001758
Permanent Link: https://hdl.handle.net/11104/0347250File Download Size Commentary Version Access 0578225.pdf 0 5.1 MB Publisher’s postprint require - 2.0489870 - ÚOCHB 2019 RIV US eng J - Journal Article
Javanainen, M. - Lamberg, A. - Cwiklik, Lukasz - Vattulainen, I. - Ollila, O. H. Samuli
Atomistic Model for Nearly Quantitative Simulations of Langmuir Monolayers.
Langmuir. Roč. 34, č. 7 (2018), s. 2565-2572. ISSN 0743-7463
Institutional support: RVO:61388963
Keywords : molecular dynamics simulations * fluid lipid layer * liquid-vapor interface
OECD category: Physical chemistry
Impact factor: 3.683, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284187 - 3.0489866 - ÚFCH JH 2019 RIV US eng J - Journal Article
Javanainen, M. - Lamberg, A. - Cwiklik, Lukasz - Vattulainen, I. - Ollila, O. H. S.
Atomistic Model for Nearly Quantitative Simulations of Langmuir Monolayers.
Langmuir. Roč. 34, č. 7 (2018), s. 2565-2572. ISSN 0743-7463
R&D Projects: GA ČR(CZ) GA17-06792S
Institutional support: RVO:61388955
Keywords : Atomistic molecular dynamics simulations * Bioinformatics * fluid lipid layer
OECD category: Physical chemistry
Impact factor: 3.683, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284184File Download Size Commentary Version Access 0489866.pdf 3 472.5 KB Publisher’s postprint require - 4.0482575 - ÚOCHB 2018 RIV US eng J - Journal Article
Javanainen, M. - Martinez-Seara, Hector - Vattulainen, I.
Excessive aggregation of membrane proteins in the Martini model.
PLoS ONE. Roč. 12, č. 11 (2017), č. článku e0187936. ISSN 1932-6203. E-ISSN 1932-6203
R&D Projects: GA ČR(CZ) GBP208/12/G016
Institutional support: RVO:61388963
Keywords : transmembrane domain dimerization * resonance energy transfer * helix-helix interactions
OECD category: Physical chemistry
Impact factor: 2.766, year: 2017
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0187936
Permanent Link: http://hdl.handle.net/11104/0277994 - 5.0479162 - ÚOCHB 2018 RIV US eng J - Journal Article
Javanainen, M. - Martinez-Seara, Hector - Metzler, R. - Vattulainen, I.
Diffusion of Integral Membrane Proteins in Protein-Rich Membranes.
Journal of Physical Chemistry Letters. Roč. 8, č. 17 (2017), s. 4308-4313. ISSN 1948-7185
R&D Projects: GA ČR(CZ) GBP208/12/G016
Institutional support: RVO:61388963
Keywords : giant unilamellar vesicles * single-molecule tracking * lipid bilayer membranes
OECD category: Physical chemistry
Impact factor: 8.709, year: 2017
Permanent Link: http://hdl.handle.net/11104/0275160 - 6.0475341 - ÚOCHB 2018 RIV GB eng J - Journal Article
Javanainen, M. - Martinez-Seara, Hector - Vattulainen, I.
Nanoscale Membrane Domain Formation Driven by Cholesterol.
Scientific Reports. Roč. 7, Apr 25 (2017), č. článku 1143. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GBP208/12/G016
Institutional support: RVO:61388963
Keywords : molecular dynamics simulations * differential scanning calorimetry * pulmonary surfactant membranes
OECD category: Physical chemistry
Impact factor: 4.122, year: 2017
https://www.nature.com/articles/s41598-017-01247-9
Permanent Link: http://hdl.handle.net/11104/0272166 - 7.0475321 - ÚOCHB 2018 RIV NL eng J - Journal Article
Manna, M. - Javanainen, M. - Martinez-Seara Monne, Hector - Gabius, H. J. - Rog, T. - Vattulainen, I.
Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation.
Biochimica Et Biophysica Acta-Biomembranes. Roč. 1859, č. 5 (2017), s. 870-878. ISSN 0005-2736. E-ISSN 1879-2642
Institutional support: RVO:61388963
Keywords : glycosphingolipid * cholesterol * membrane domain * membrane registry * molecular dynamics * computer simulations
OECD category: Physical chemistry
Impact factor: 3.438, year: 2017
Permanent Link: http://hdl.handle.net/11104/0272153 - 8.0474712 - ÚFCH JH 2018 RIV GB eng J - Journal Article
Javanainen, M. - Melcrová, Adéla - Magarkar, Aniket - Jurkiewicz, Piotr - Hof, Martin - Jungwirth, Pavel - Martinez-Seara, Hector
Two cations, two mechanisms: interactions of sodium and calcium with zwitterionic lipid membranes.
Chemical Communications. Roč. 53, č. 39 (2017), s. 5380-5383. ISSN 1359-7345. E-ISSN 1364-548X
R&D Projects: GA ČR GA17-03160S; GA ČR(CZ) GA16-01074S
Grant - others:AV ČR(CZ) AP1102
Program: Akademická prémie - Praemium Academiae
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : phospholipid bilayers * molecular dynamics * fluorescence
OECD category: Physical chemistry; Physical chemistry (UOCHB-X)
Impact factor: 6.290, year: 2017
Method of publishing: Open access
Permanent Link: http://hdl.handle.net/11104/0271700File Download Size Commentary Version Access 0474712.pdf 10 2.1 MB open access Publisher’s postprint open-access - 9.0469690 - ÚOCHB 2017 RIV GB eng J - Journal Article
Catte, A. - Girych, M. - Javanainen, M. - Loison, C. - Melcr, Josef - Miettinen, M. S. - Monticelli, L. - Määttä, J. - Oganesyan, V. S. - Ollila, O. H. S. - Tynkkynen, J. - Vilov, S.
Molecular electrometer and binding of cations to phospholipid bilayers.
Physical Chemistry Chemical Physics. Roč. 18, č. 47 (2016), s. 32560-32569. ISSN 1463-9076. E-ISSN 1463-9084
Institutional support: RVO:61388963
Keywords : atom force field * free energy perturbation * lipis membranes
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 4.123, year: 2016
Permanent Link: http://hdl.handle.net/11104/0267513 - 10.0463890 - ÚOCHB 2017 RIV NL eng J - Journal Article
Javanainen, M. - Martinez-Seara, Hector
Efficient preparation and analysis of membrane and membrane protein systems.
Biochimica Et Biophysica Acta-Biomembranes. Roč. 1858, č. 10 (2016), s. 2468-2482. ISSN 0005-2736. E-ISSN 1879-2642
Institutional support: RVO:61388963
Keywords : tools and software * membrane building * protein insertion * molecular dynamics * lipid bilayer
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.498, year: 2016
Permanent Link: http://hdl.handle.net/11104/0262971