Search results

  1. 1.
    0578225 - ÚFCH JH 2025 RIV NL eng J - Journal Article
    Saija, Maria Chiara - Melcrová, Adéla - Pajerski, Wojciech - Schachter, I. - Javanainen, M. - Cebecauer, Marek - Cwiklik, Lukasz
    Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study.
    Biophysical Chemistry. Roč. 304, JAN 2024 (2024), č. článku 107124. ISSN 0301-4622. E-ISSN 1873-4200
    R&D Projects: GA ČR(CZ) GX19-26854X
    Institutional support: RVO:61388955
    Keywords : PAG * membranes * Palmitoylation
    OECD category: Physical chemistry
    Impact factor: 3.8, year: 2022
    Method of publishing: Limited access
    https://www.sciencedirect.com/science/article/pii/S0301462223001758
    Permanent Link: https://hdl.handle.net/11104/0347250
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    0578225.pdf05.1 MBPublisher’s postprintrequire
     
     
  2. 2.
    0489870 - ÚOCHB 2019 RIV US eng J - Journal Article
    Javanainen, M. - Lamberg, A. - Cwiklik, Lukasz - Vattulainen, I. - Ollila, O. H. Samuli
    Atomistic Model for Nearly Quantitative Simulations of Langmuir Monolayers.
    Langmuir. Roč. 34, č. 7 (2018), s. 2565-2572. ISSN 0743-7463
    Institutional support: RVO:61388963
    Keywords : molecular dynamics simulations * fluid lipid layer * liquid-vapor interface
    OECD category: Physical chemistry
    Impact factor: 3.683, year: 2018
    Permanent Link: http://hdl.handle.net/11104/0284187
     
     
  3. 3.
    0489866 - ÚFCH JH 2019 RIV US eng J - Journal Article
    Javanainen, M. - Lamberg, A. - Cwiklik, Lukasz - Vattulainen, I. - Ollila, O. H. S.
    Atomistic Model for Nearly Quantitative Simulations of Langmuir Monolayers.
    Langmuir. Roč. 34, č. 7 (2018), s. 2565-2572. ISSN 0743-7463
    R&D Projects: GA ČR(CZ) GA17-06792S
    Institutional support: RVO:61388955
    Keywords : Atomistic molecular dynamics simulations * Bioinformatics * fluid lipid layer
    OECD category: Physical chemistry
    Impact factor: 3.683, year: 2018
    Permanent Link: http://hdl.handle.net/11104/0284184
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    0489866.pdf3472.5 KBPublisher’s postprintrequire
     
     
  4. 4.
    0482575 - ÚOCHB 2018 RIV US eng J - Journal Article
    Javanainen, M. - Martinez-Seara, Hector - Vattulainen, I.
    Excessive aggregation of membrane proteins in the Martini model.
    PLoS ONE. Roč. 12, č. 11 (2017), č. článku e0187936. ISSN 1932-6203. E-ISSN 1932-6203
    R&D Projects: GA ČR(CZ) GBP208/12/G016
    Institutional support: RVO:61388963
    Keywords : transmembrane domain dimerization * resonance energy transfer * helix-helix interactions
    OECD category: Physical chemistry
    Impact factor: 2.766, year: 2017
    http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0187936
    Permanent Link: http://hdl.handle.net/11104/0277994
     

    Research data: Zenodo, Zenodo
     
  5. 5.
    0479162 - ÚOCHB 2018 RIV US eng J - Journal Article
    Javanainen, M. - Martinez-Seara, Hector - Metzler, R. - Vattulainen, I.
    Diffusion of Integral Membrane Proteins in Protein-Rich Membranes.
    Journal of Physical Chemistry Letters. Roč. 8, č. 17 (2017), s. 4308-4313. ISSN 1948-7185
    R&D Projects: GA ČR(CZ) GBP208/12/G016
    Institutional support: RVO:61388963
    Keywords : giant unilamellar vesicles * single-molecule tracking * lipid bilayer membranes
    OECD category: Physical chemistry
    Impact factor: 8.709, year: 2017
    Permanent Link: http://hdl.handle.net/11104/0275160
     
     
  6. 6.
    0475341 - ÚOCHB 2018 RIV GB eng J - Journal Article
    Javanainen, M. - Martinez-Seara, Hector - Vattulainen, I.
    Nanoscale Membrane Domain Formation Driven by Cholesterol.
    Scientific Reports. Roč. 7, Apr 25 (2017), č. článku 1143. ISSN 2045-2322. E-ISSN 2045-2322
    R&D Projects: GA ČR(CZ) GBP208/12/G016
    Institutional support: RVO:61388963
    Keywords : molecular dynamics simulations * differential scanning calorimetry * pulmonary surfactant membranes
    OECD category: Physical chemistry
    Impact factor: 4.122, year: 2017
    https://www.nature.com/articles/s41598-017-01247-9
    Permanent Link: http://hdl.handle.net/11104/0272166
     
     
  7. 7.
    0475321 - ÚOCHB 2018 RIV NL eng J - Journal Article
    Manna, M. - Javanainen, M. - Martinez-Seara Monne, Hector - Gabius, H. J. - Rog, T. - Vattulainen, I.
    Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation.
    Biochimica Et Biophysica Acta-Biomembranes. Roč. 1859, č. 5 (2017), s. 870-878. ISSN 0005-2736. E-ISSN 1879-2642
    Institutional support: RVO:61388963
    Keywords : glycosphingolipid * cholesterol * membrane domain * membrane registry * molecular dynamics * computer simulations
    OECD category: Physical chemistry
    Impact factor: 3.438, year: 2017
    Permanent Link: http://hdl.handle.net/11104/0272153
     
     
  8. 8.
    0474712 - ÚFCH JH 2018 RIV GB eng J - Journal Article
    Javanainen, M. - Melcrová, Adéla - Magarkar, Aniket - Jurkiewicz, Piotr - Hof, Martin - Jungwirth, Pavel - Martinez-Seara, Hector
    Two cations, two mechanisms: interactions of sodium and calcium with zwitterionic lipid membranes.
    Chemical Communications. Roč. 53, č. 39 (2017), s. 5380-5383. ISSN 1359-7345. E-ISSN 1364-548X
    R&D Projects: GA ČR GA17-03160S; GA ČR(CZ) GA16-01074S
    Grant - others:AV ČR(CZ) AP1102
    Program: Akademická prémie - Praemium Academiae
    Institutional support: RVO:61388955 ; RVO:61388963
    Keywords : phospholipid bilayers * molecular dynamics * fluorescence
    OECD category: Physical chemistry; Physical chemistry (UOCHB-X)
    Impact factor: 6.290, year: 2017
    Method of publishing: Open access
    Permanent Link: http://hdl.handle.net/11104/0271700
    FileDownloadSizeCommentaryVersionAccess
    0474712.pdf102.1 MBopen accessPublisher’s postprintopen-access
     
     
  9. 9.
    0469690 - ÚOCHB 2017 RIV GB eng J - Journal Article
    Catte, A. - Girych, M. - Javanainen, M. - Loison, C. - Melcr, Josef - Miettinen, M. S. - Monticelli, L. - Määttä, J. - Oganesyan, V. S. - Ollila, O. H. S. - Tynkkynen, J. - Vilov, S.
    Molecular electrometer and binding of cations to phospholipid bilayers.
    Physical Chemistry Chemical Physics. Roč. 18, č. 47 (2016), s. 32560-32569. ISSN 1463-9076. E-ISSN 1463-9084
    Institutional support: RVO:61388963
    Keywords : atom force field * free energy perturbation * lipis membranes
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Impact factor: 4.123, year: 2016
    Permanent Link: http://hdl.handle.net/11104/0267513
     
     
  10. 10.
    0463890 - ÚOCHB 2017 RIV NL eng J - Journal Article
    Javanainen, M. - Martinez-Seara, Hector
    Efficient preparation and analysis of membrane and membrane protein systems.
    Biochimica Et Biophysica Acta-Biomembranes. Roč. 1858, č. 10 (2016), s. 2468-2482. ISSN 0005-2736. E-ISSN 1879-2642
    Institutional support: RVO:61388963
    Keywords : tools and software * membrane building * protein insertion * molecular dynamics * lipid bilayer
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Impact factor: 3.498, year: 2016
    Permanent Link: http://hdl.handle.net/11104/0262971
     
     

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