Search results
- 1.0492044 - ÚI 2019 RIV CH eng C - Conference Paper (international conference)
Papáček, Š. - Matonoha, Ctirad - Petera, K.
Modeling and Simulation of Microalgae Growth in a Couette-Taylor Bioreactor.
High Performance Computing in Science and Engineering - HPCSE 2017. Cham: Springer, 2018 - (Kozubek, T.; Čermák, M.; Tichý, P.; Blaheta, R.; Šístek, J.; Lukáš, D.; Jaroš, J.), s. 174-187. Lecture Notes in Computer Science, 11087. ISBN 978-3-319-97135-3. ISSN 0302-9743.
[HPCSE 2017: International Conference on High Performance Computing in Science and Engineering /3./. Karolinka (CZ), 22.05.2017-25.05.2017]
Grant - others:CENAKVA(CZ) CZ.1.05/2.1.00/01.0024; GA MŠk(CZ) LO1205; CENAKVA(CZ) CZ.1.05/2.1.00/19.0380
Institutional support: RVO:67985807
Keywords : Microalgae * Mathematical modeling * Photosynthesis * CFD * Couette-Taylor bioreactor * Flashing light enhancement
OECD category: Pure mathematics
Permanent Link: http://hdl.handle.net/11104/0285622 - 2.0492042 - ÚI 2019 RIV CH eng C - Conference Paper (international conference)
Matonoha, Ctirad - Papáček, Š. - Kindermann, S.
Disc vs. Annulus: On the Bleaching Pattern Optimization for FRAP Experiments.
High Performance Computing in Science and Engineering - HPCSE 2017. Cham: Springer, 2018 - (Kozubek, T.; Čermák, M.; Tichý, P.; Blaheta, R.; Šístek, J.; Lukáš, D.; Jaroš, J.), s. 160-173. Lecture Notes in Computer Science, 11087. ISBN 978-3-319-97135-3. ISSN 0302-9743.
[HPCSE 2017: International Conference on High Performance Computing in Science and Engineering /3./. Karolinka (CZ), 22.05.2017-25.05.2017]
Grant - others:CENAKVA(CZ) CZ.1.05/2.1.00/01.0024; GA MŠk(CZ) LO1205; CENAKVA(CZ) CZ.1.05/2.1.00/19.0380
Institutional support: RVO:67985807
Keywords : Optimization * Parameter identification * FRAP Bleaching pattern * Initial boundary value problem * Sensitivity measure
OECD category: Pure mathematics
Permanent Link: http://hdl.handle.net/11104/0285620 - 3.0476436 - ÚI 2018 RIV CZ eng C - Conference Paper (international conference)
Matonoha, Ctirad - Papáček, Š. - Kindermann, S.
On the Optimization of Initial Conditions for a Model Parameter Estimation.
Programs and algorithms of numerical mathematics 18. Prague: Institute of Mathematics CAS, 2017 - (Chleboun, J.; Kůs, P.; Přikryl, P.; Segeth, K.; Šístek, J.; Vejchodský, T.), s. 73-80. ISBN 978-80-85823-67-7.
[Programs and Algorithms of Numerical Mathematics /18./. Janov nad Nisou (CZ), 19.06.2016-24.06.2016]
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205
Institutional support: RVO:67985807
Keywords : FRAP * sensitivity analysis * optimal experimental design * parameter estimation * finite differences
OECD category: Applied mathematics
http://hdl.handle.net/10338.dmlcz/703000
Permanent Link: http://hdl.handle.net/11104/0272938File Download Size Commentary Version Access PANM_18-2016-1_12.pdf 2 246.5 KB Publisher’s postprint open-access - 4.0459275 - ÚI 2017 RIV CH eng C - Conference Paper (international conference)
Matonoha, Ctirad - Papáček, Š.
Parameter Identification Problem Based on FRAP Images: From Data Processing to Optimal Design of Photobleaching Experiments.
High Performance Computing in Science and Engineering. Cham: Springer, 2016 - (Kozubek, T.; Blaheta, R.; Šístek, R.; Rozložník, M.; Čermák, M.), s. 186-195. Lecture Notes in Computer Science, 9611. ISBN 978-3-319-40360-1. ISSN 0302-9743.
[HPCSE 2015. High Performance Computing in Science and Engineering /2./. Soláň - Beskydy (CZ), 25.05.2015-28.05.2015]
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205
Institutional support: RVO:67985807
Keywords : FRAP * optimal experimental design * sensitivity analysis * parameter identification
Subject RIV: BA - General Mathematics
Permanent Link: http://hdl.handle.net/11104/0259501File Download Size Commentary Version Access a0459275.pdf 0 804.1 KB Publisher’s postprint require - 5.0457696 - ÚI 2016 RIV ES eng C - Conference Paper (international conference)
Papáček, Š. - Macdonald, B. - Matonoha, Ctirad
Closed-form Formulae vs. PDE Based Numerical Solution for FRAP Data Processing: Theoretical and Practical Comparison.
Modelling for Engineering and Human Behaviour 2015. Valencia: Universitat Politecnica de Valencia, 2015 - (Jódar, L.; Acedo, L.; Cortés, J.; Torregrosa, J.), s. 359-364. ISBN 978-84-608-5355-8.
[Mathematical Modelling for Engineering and Human Behaviour 2015. Valencia (ES), 09.09.2015-11.09.2015]
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205
Institutional support: RVO:67985807
Keywords : fluorescence recovery after photobleaching (FRAP) * parameter estimation * sensitivity analysis * partial differential equation (PDE)
Subject RIV: BA - General Mathematics
Permanent Link: http://hdl.handle.net/11104/0258070File Download Size Commentary Version Access a0457696.pdf 0 1.3 MB Publisher’s postprint require - 6.0444130 - ÚI 2016 RIV CZ eng C - Conference Paper (international conference)
Papáček, Š. - Jablonský, J. - Matonoha, Ctirad
On Two Methods for the Parameter Estimation Problem with Spatio-Temporal FRAP Data.
Programs and algorithms of numerical mathematics 17. Proceedings of seminar. Praha: Matematický ústav AV ČR, v.v.i, 2015 - (Chleboun, J.; Přikryl, P.; Segeth, K.; Šístek, J.; Vejchodský, T.), s. 163-168. ISBN 978-80-85823-64-6.
[Programs and Algorithms of Numerical Mathematics /17./. Dolní Maxov (CZ), 08.06.2014-13.06.2014]
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205; GA MŠk(CZ) EE2.3.30.0006
Institutional support: RVO:67985807
Keywords : parameter estimation * fluorescence recovery after photobleaching * diffusion equation * Moullineaux method * Fisher information matrix * sensitivity analysis * confidence intervals * uncertainty quantification
Subject RIV: BA - General Mathematics
http://dml.cz/handle/10338.dmlcz/702679
Permanent Link: http://hdl.handle.net/11104/0246708File Download Size Commentary Version Access PANM_17-2014-1_27.pdf 3 200 KB Publisher’s postprint open-access - 7.0443270 - ÚI 2016 RIV CH eng C - Conference Paper (international conference)
Papáček, Š. - Jablonský, J. - Matonoha, Ctirad - Kaňa, Radek - Kindermann, S.
FRAP & FLIP: Two Sides of the Same Coin?
Bioinformatics and Biomedical Engineering, Part II. Vol. 2. Cham: Springer, 2015 - (Ortuno, F.; Rojas, I.), s. 444-455. Lecture Notes in Bioinformatics, 9044. ISBN 978-3-319-16479-3. ISSN 0302-9743.
[IWBBIO 2015. International Conference /3./. Granada (ES), 15.04.2015-17.04.2015]
R&D Projects: GA MŠMT LO1416; GA ČR GAP501/12/0304
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205; GA MŠk(CZ) EE2.3.30.0006; GA TA ČR(CZ) TA01010214
Institutional support: RVO:67985807 ; RVO:61388971
Keywords : FRAP * FLIP * sensitivity analysis * parameter identification
Subject RIV: BA - General Mathematics; BA - General Mathematics (MBU-M)
Permanent Link: http://hdl.handle.net/11104/0246004File Download Size Commentary Version Access a0443270.pdf 3 522.1 KB Publisher’s postprint require - 8.0435026 - ÚTIA 2015 RIV GB eng C - Conference Paper (international conference)
Soukup, Jindřich - Lašan, M. - Šroubek, Filip
Segmentation of Individual Cells in Phase Contrast Microscopy Images.
Proceedings of the 18th Conference on Medical Image Understanding and Analysis. London: City University London, 2014 - (Reyes-Aldasoro, C.; Slabaugh, G.), s. 185-190. ISBN 1-901725-51-0.
[Medical Image Understanding and Analysis 2014. London (GB), 09.07.2014-11.07.2014]
R&D Projects: GA ČR GA13-29225S
Grant - others:GA MŠk(CZ) LO1205; GAJU(CZ) 134/2013/Z; GA UK(CZ) 914813/2013; OP VaVpI(CZ) CZ.1.05/2.1.00/ 01.0024
Institutional support: RVO:67985556
Keywords : image segmentation * phase contrast microscopy * time-lapse imaging
Subject RIV: JD - Computer Applications, Robotics
http://library.utia.cas.cz/separaty/2014/ZOI/soukup-0435026.pdf
Permanent Link: http://hdl.handle.net/11104/0239120