Search results
- 1.0552451 - BC 2022 RIV GB eng J - Journal Article
Shabarova, Tatiana - Salcher, Michaela M. - Porcal, Petr - Znachor, Petr - Nedoma, Jiří - Grossart, H.P. - Seďa, Jaromír - Hejzlar, Josef - Šimek, Karel
Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession.
Nature Microbiology. Roč. 6, č. 4 (2021), s. 479-+. ISSN 2058-5276. E-ISSN 2058-5276
R&D Projects: GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * ribosomal-rna * peg-model * lake * assemblages * phosphorus * projections * reservoirs * emissions * silva
OECD category: Microbiology
Impact factor: 30.964, year: 2021
Method of publishing: Limited access
https://doi.org/10.1038/s41564-020-00852-1
Permanent Link: http://hdl.handle.net/11104/0327580File Download Size Commentary Version Access SHABAROVA NatureMicrobiol 2021.pdf 0 13.8 MB Author´s preprint require - 2.0542712 - MBÚ 2022 RIV CH eng J - Journal Article
Piwosz, Kasia - Mukherjee, Indranil - Salcher, Michaela M. - Grujcic, V. - Šimek, Karel
CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology.
Frontiers in Microbiology. Roč. 12, MAR 4 2021 (2021), č. článku 640066. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : aquatic microbial food webs * card-fish * grazing by protists * protists * unicellular eukaryotes * bacterivorous * omnivorous and predatory flagellates * heterotrophic and mixotrophic flagellates
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 6.064, year: 2021
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full
Permanent Link: http://hdl.handle.net/11104/0320081 - 3.0538633 - BC 2021 RIV GB eng J - Journal Article
Šimek, Karel - Grujčič, Vesna - Mukherjee, Indranil - Kasalický, Vojtěch - Nedoma, Jiří - Posch, T. - Mehrshad, Maliheh - Salcher, Michaela M.
Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes.
FEMS Microbiology Ecology. Roč. 96, č. 10 (2020), č. článku fiaa121. ISSN 0168-6496. E-ISSN 1574-6941
R&D Projects: GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : ciliates * bacterivorous and predatory flagellates * Cercozoa * Cryptophyceae * freshwater microbial food webs * Katablepharidacea
OECD category: Ecology
Impact factor: 4.194, year: 2020
Method of publishing: Open access
https://doi.org/10.1093/femsec/fiaa121
Permanent Link: http://hdl.handle.net/11104/0316400File Download Size Commentary Version Access SIMEK FEMS Microbiol Ecol 2020.pdf 0 3.9 MB Author´s preprint open-access - 4.0531454 - MBÚ 2021 RIV US eng J - Journal Article
Piwosz, Kasia - Shabarova, Tatiana - Pernthaler, J. - Posch, T. - Šimek, Karel - Porcal, Petr - Salcher, Michaela M.
Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations.
mSphere. Roč. 5, č. 2 (2020), č. článku e00052-20. ISSN 2379-5042. E-ISSN 2379-5042
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA19-23469S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : CARD-FISH * amplicon sequencing * bacterial communities
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 4.389, year: 2020
Method of publishing: Open access
https://msphere.asm.org/content/5/2/e00052-20
Permanent Link: http://hdl.handle.net/11104/0310116 - 5.0517802 - BC 2021 RIV DE eng J - Journal Article
Weinbauer, M.G. - Suominen, S. - Jezbera, Jan - Kerros, M. E. - Marro, S. - Dolan, J. R. - Šimek, Karel
Shifts in cell size and community composition of bacterioplankton due to grazing by heterotrophic flagellates: evidence from a marine system.
Aquatic Microbial Ecology. Roč. 83, č. 3 (2019), s. 295-308. ISSN 0948-3055. E-ISSN 1616-1564
R&D Projects: GA ČR(CZ) GA13-00243S
Institutional support: RVO:60077344
Keywords : flagellates * bacteria * diversity * life strategies * grazing defense
OECD category: Microbiology
Impact factor: 1.841, year: 2019
Method of publishing: Limited access
https://www.int-res.com/abstracts/ame/v83/n3/p295-308/
Permanent Link: http://hdl.handle.net/11104/0303308 - 6.0510316 - BC 2020 RIV US eng J - Journal Article
Šimek, Karel - Sirová, Dagmara
Fluorescently Labeled Bacteria as a Tracer to Reveal Novel Pathways of Organic Carbon Flow in Aquatic Ecosystems.
Jove-Journal of Visualized Experiments. Roč. 151, Sep (2019), č. článku e59903. ISSN 1940-087X
R&D Projects: GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-16554S; GA MŠMT(CZ) EF16_025/0007417
Institutional support: RVO:60077344
Keywords : environmental sciences * aquatic microbial food webs * carbon
OECD category: Microbiology
Impact factor: 1.163, year: 2019
Method of publishing: Limited access
https://www.jove.com/video/59903/fluorescently-labeled-bacteria-as-tracer-to-reveal-novel-pathways
Permanent Link: http://hdl.handle.net/11104/0301298 - 7.0510122 - BC 2020 RIV DE eng J - Journal Article
Bednařík, A. - Blaser, M. - Matoušů, Anna - Tušer, Michal - Chaudhary, P. P. - Šimek, Karel - Rulík, M.
Sediment methane dynamics along the Elbe River.
Limnologica. Roč. 79, Nov (2019), č. článku 125716. ISSN 0075-9511. E-ISSN 1873-5851
R&D Projects: GA ČR(CZ) GA13-00243S; GA MŠMT(CZ) EE2.3.20.0204
Institutional support: RVO:60077344
Keywords : methane * river sediments * stable carbon isotope
OECD category: Marine biology, freshwater biology, limnology
Impact factor: 1.803, year: 2019
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0075951118301981?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0300672 - 8.0504975 - BC 2020 RIV CH eng J - Journal Article
Matoušů, Anna - Rulík, M. - Tušer, Michal - Bednařík, A. - Šimek, Karel - Bussmann, I.
Methane dynamics in a large river: a case study of the Elbe River.
Aquatic Sciences. Roč. 81, č. 1 (2019), č. článku 12. ISSN 1015-1621. E-ISSN 1420-9055
R&D Projects: GA ČR(CZ) GA13-00243S; GA MŠMT(CZ) EE2.3.20.0204
Institutional support: RVO:60077344
Keywords : diffusive flux * ebullition * Elbe river * methane concentration
OECD category: Marine biology, freshwater biology, limnology
Impact factor: 2.402, year: 2019
Method of publishing: Limited access
https://link.springer.com/article/10.1007%2Fs00027-018-0609-9
Permanent Link: http://hdl.handle.net/11104/0297232 - 9.0495997 - MBÚ 2019 RIV GB eng J - Journal Article
Piwosz, Kasia - Shabarova, Tatiana - Tomasch, J. - Šimek, Karel - Kopejtka, Karel - Kahl, S. - Pieper, D. H. - Koblížek, Michal
Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS).
The ISME Journal. Roč. 12, č. 11 (2018), s. 2640-2654. ISSN 1751-7362. E-ISSN 1751-7370
R&D Projects: GA ČR GA15-12197S; GA ČR GA13-11281S; GA ČR(CZ) GA13-00243S; GA MŠMT(CZ) LO1416; GA MŠMT(CZ) ED2.1.00/19.0392
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : FRESH-WATER RESERVOIR= * SPRING PHYTOPLANKTON BLOOM * IN-SITU HYBRIDIZATION
OECD category: Microbiology
Impact factor: 9.493, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288835File Download Size Commentary Version Access 135 Determining lineage-specific bacterial growth curves.pdf 5 2.7 MB Publisher’s postprint require - 10.0495155 - BC 2019 RIV GB eng J - Journal Article
Mehrshad, Maliheh - Rodriguez-Valera, F. - Amoozegar, M.A. - López-García, P. - Ghai, Rohit
The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling.
The ISME Journal. Roč. 12, č. 3 (2018), s. 655-668. ISSN 1751-7362. E-ISSN 1751-7370
R&D Projects: GA ČR(CZ) GA13-00243S; GA ČR GA17-04828S
Grant - others:AV ČR(CZ) L200961651
Program: Program podpory perspektivních lidských zdrojů
Institutional support: RVO:60077344
Keywords : sulfate-reducing prokaryotes * nitrite-oxidizing bacterium * ribosomal-rna genes * phylum chloroflexi
OECD category: Microbiology
Impact factor: 9.493, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288295