Search results
- 1.0578599 - ÚOCHB 2024 RIV CH eng J - Journal Article
Tanaka, Y. - Yamanaka, D. - Morioka, S. - Yamaguchi, T. - Morikawa, M. - Kodama, T. S. - Sychrovský, Vladimír - Kojima, C. - Hattori, Y.
Physicochemical Characterization of the Catalytic Unit of Hammerhead Ribozyme and Its Relationship with the Catalytic Activity.
Biophysica. Roč. 2, č. 3 (2022), s. 221-239. E-ISSN 2673-4125
Institutional support: RVO:61388963
Keywords : hammerhead ribozyme * mechanism * pKa * pH-titration * NMR spectroscopy * G12 * G10.1
OECD category: Biophysics
Method of publishing: Open access
https://doi.org/10.3390/biophysica2030022
Permanent Link: https://hdl.handle.net/11104/0347566 - 2.0494039 - FZÚ 2019 RIV NL eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Ono, A. - Sychrovský, V. - Kojima, C. - Tanaka, Y.
Hg-II/Ag-I-mediated base pairs and their NMR spectroscopic studies.
Inorganica chimica acta. Roč. 452, Oct (2016), s. 34-42. ISSN 0020-1693. E-ISSN 1873-3255
Institutional support: RVO:68378271
Keywords : metallo-base pair * NMR spectroscopy * structure
OECD category: Biophysics
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0287282 - 3.0494037 - FZÚ 2019 RIV GB eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Yamanaka, D. - Otaki, H. - Kikkawa, S. - Kondo, Y. - Katahira, R. - Bickelhaupt, F. M. - Guerra, C. F. - Ono, A. - Sychrovský, V. - Kojima, C. - Tanaka, Y.
Direct detection of the mercury-nitrogen bond in the thymine-Hg-II-thymine base-pair with Hg-199 NMR spectroscopy.
Chemical Communications. Roč. 51, č. 40 (2015), s. 8488-8491. ISSN 1359-7345. E-ISSN 1364-548X
Institutional support: RVO:68378271
Keywords : Nuclear Magnetic Resonance * relativistic DFT * metal DNA
OECD category: Biophysics
Impact factor: 6.567, year: 2015
Permanent Link: http://hdl.handle.net/11104/0287281 - 4.0475942 - ÚOCHB 2018 RIV GB eng J - Journal Article
Šebera, Jakub - Hattori, Y. - Sato, D. - Řeha, David - Nencka, Radim - Kohno, T. - Kojima, C. - Tanaka, Y. - Sychrovský, Vladimír
The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine.
Nucleic Acids Research. Roč. 45, č. 9 (2017), s. 5231-5242. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : 8-oxoguanine * hOGG1 * QM/MM * NMR * base-excision repair
OECD category: Physical chemistry
Impact factor: 11.561, year: 2017
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx157
Permanent Link: http://hdl.handle.net/11104/0272532 - 5.0466145 - ÚOCHB 2017 RIV NL eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Hg-II/Ag-I-mediated base pairs and their NMR spectroscopic studies.
Inorganica chimica acta. Roč. 452, Oct 1 (2016), s. 34-42. ISSN 0020-1693. E-ISSN 1873-3255
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : NMR * Hg * Ag * metal-DNA
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264544 - 6.0464723 - ÚOCHB 2017 RIV DE eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Kondo, J. - Yamanaka, D. - Kondo, Y. - Okamoto, I. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Structure Determination of an Ag-I-Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with H-1/N-15/Ag-109 NMR Spectroscopy.
Chemistry - A European Journal. Roč. 22, č. 37 (2016), s. 13028-13031. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963
Keywords : NMR * Ag * cytosine * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 5.317, year: 2016
Permanent Link: http://hdl.handle.net/11104/0263506 - 7.0444868 - ÚOCHB 2016 RIV GB eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Yamanaka, D. - Otaki, H. - Kikkawa, S. - Kondo, Y. - Katahira, R. - Bickelhaupt, F. M. - Guerra, C. F. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Direct detection of the mercury-nitrogen bond in the thymine-Hg-II-thymine base-pair with Hg-199 NMR spectroscopy.
Chemical Communications. Roč. 51, č. 40 (2015), s. 8488-8491. ISSN 1359-7345. E-ISSN 1364-548X
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : T-Hg-T * NMR * spin-spin coupling * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 6.567, year: 2015
http://pubs.rsc.org/en/content/articlepdf/2015/cc/c5cc02423d
Permanent Link: http://hdl.handle.net/11104/0247339 - 8.0428654 - ÚOCHB 2015 RIV GB eng J - Journal Article
Yamaguchi, H. - Šebera, Jakub - Kondo, J. - Oda, S. - Komuro, T. - Kawamura, T. - Dairaku, T. - Kondo, Y. - Okamoto, I. - Ono, A. - Burda, J. V. - Kojima, C. - Sychrovský, Vladimír - Tanaka, Y.
The structure of metallo-DNA with consecutive thymine-Hg-II-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Research. Roč. 42, č. 6 (2014), s. 4094-4099. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : NMR structures * mercury * metalation * metal-DNA binding * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 9.112, year: 2014
http://nar.oxfordjournals.org/content/42/6/4094.full
Permanent Link: http://hdl.handle.net/11104/0233994 - 9.0394761 - ÚOCHB 2014 RIV DE eng J - Journal Article
Šebera, Jakub - Burda, J. - Straka, Michal - Ono, A. - Kojima, C. - Tanaka, Y. - Sychrovský, Vladimír
Formation of a Thymine-Hg-II-Thymine Metal-Mediated DNA Base Pair: Proposal and Theoretical Calculation of the Reaction Pathway.
Chemistry - A European Journal. Roč. 19, č. 30 (2013), s. 9884-9894. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR GAP205/10/0228; GA MŠMT(CZ) LH11033
Institutional support: RVO:61388963
Keywords : DNA structures * mercury * metalation * metal-DNA binding * nucleobases
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 5.696, year: 2013
Permanent Link: http://hdl.handle.net/11104/0223107