Search results
- 1.0499373 - MBÚ 2019 RIV US eng J - Journal Article
Grinkevich, Pavel - Sinha, Dhiraj - Iermak, Iuliia - Guzanová, Alena - Weiserová, Marie - Ludwig, Jost - Mesters, J. R. - Ettrich, Horst Rüdiger
Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding.
Journal of Biological Chemistry. Roč. 293, č. 39 (2018), s. 15043-15054. ISSN 0021-9258. E-ISSN 1083-351X
R&D Projects: GA ČR GAP207/12/2323; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388971
Keywords : crystal structure * X-ray crystallography * DNA endonuclease
OECD category: Biochemistry and molecular biology
Impact factor: 4.106, year: 2018
Permanent Link: http://hdl.handle.net/11104/0291582File Download Size Commentary Version Access J. Biol. Chem.-2018-Grinkevich-jbc.RA118.003978.pdf 7 4.8 MB Author´s preprint require - 2.0491852 - MBÚ 2019 RIV US eng J - Journal Article
Sinha, Dhiraj - Bialevich, Vitali - Shamayeva, Katsiaryna - Guzanová, Alena - Šišáková, A. - Cséfalvay, Eva - Řeha, David - Krejčí, L. - Carey, Jannette - Weisserová, M. - Ettrich, Rüdiger
A residue of motif III positions the helicase domains of motor subunit HsdR in restriction-modification enzyme EcoR124I.
Journal of Molecular Modeling. Roč. 24, č. 7 (2018), č. článku 176. ISSN 1610-2940. E-ISSN 0948-5023
R&D Projects: GA ČR GAP207/12/2323; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388971
Keywords : DNA restriction enzymes * Molecular mechanics * Molecular modeling
OECD category: Biochemistry and molecular biology
Impact factor: 1.335, year: 2018
Permanent Link: http://hdl.handle.net/11104/0285462File Download Size Commentary Version Access Sinha_et_al-2018-Journal_of_Molecular_Modeling.pdf 10 3.1 MB Publisher’s postprint require - 3.0473698 - MBÚ 2018 RIV US eng J - Journal Article
Bialevich, Vitali - Sinha, Dhiraj - Shamayeva, Katsiaryna - Guzanová, Alena - Řeha, David - Cséfalvay, Eva - Carey, Jannette - Weiserová, Marie - Ettrich, Horst Rüdiger
The helical domain of the EcoR1241 motor subunit participates in ATPase activity and dsDNA translocation.
PeerJ. Roč. 5, JAN 18 (2017), č. článku e2887. ISSN 2167-8359. E-ISSN 2167-8359
R&D Projects: GA ČR GAP207/12/2323; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388971
Keywords : E. coli * Multisubunit enzyme complex * Molecular modeling
OECD category: Biochemistry and molecular biology
Impact factor: 2.118, year: 2017
Permanent Link: http://hdl.handle.net/11104/0270850File Download Size Commentary Version Access 190_The helical domain of the EcoR124I.pdf 5 7.7 MB Publisher’s postprint require - 4.0469849 - MBÚ 2017 RIV GB eng J - Journal Article
Grinkevich, Pavel - Iermak, Iuliia - Luedtke, N.A. - Mesters, J. R. - Ettrich, Rüdiger - Ludwig, Jost
pHluorin-assisted expression, purification, crystallization and X-ray diffraction data analysis of the C-terminal domain of the HsdR subunit of the Escherichia coli type I restriction-modification system EcoR124I.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 72, č. 9 (2016), s. 672-676. E-ISSN 2053-230X
R&D Projects: GA ČR GAP207/12/2323; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388971
Keywords : restriction-modification system * EcoR124I * HsdR
Subject RIV: EE - Microbiology, Virology
Impact factor: 0.799, year: 2016
Permanent Link: http://hdl.handle.net/11104/0268277File Download Size Commentary Version Access 190_pHluorin-assisted expression_purification crystallization and X_ray.pdf 2 562.3 KB Publisher’s postprint require - 5.0465331 - MBÚ 2017 RIV GB eng J - Journal Article
Pevala, V. - Truban, D. - Bauer, J. A. - Koštan, J. - Kunová, N. - Bellová, J. - Brandstetter, M. - Marini, V. - Krejčí, L. - Tomáška, L´. - Nosek, J. - Kutejová, Eva
The structure and DNA-binding properties of Mgm101 from a yeast with a linear mitochondrial genome.
Nucleic Acids Research. Roč. 44, č. 5 (2016), s. 2227-2239. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR GAP207/12/2323
Institutional support: RVO:61388971
Keywords : SMALL-ANGLE SCATTERING * SINGLE-STRANDED-DNA * HUMAN RAD52 PROTEIN
Subject RIV: EE - Microbiology, Virology
Impact factor: 10.162, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264314 - 6.0452784 - ÚVGZ 2016 RIV US eng J - Journal Article
Cséfalvay, Eva - Lapkouski, Mikalai - Guzanová, Alena - Cséfalvay, Ladislav - Baikova, T. - Shevelev, Igor - Bialevich, V. - Shamayeva, Katerina - Janščák, Pavel - Kutá-Smatanová, Ivana - Panjikar, S. - Carey, J. - Weiserová, Marie - Ettrich, Rüdiger
Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme.
PLoS ONE. Roč. 10, č. 6 (2015), e0128700. ISSN 1932-6203. E-ISSN 1932-6203
R&D Projects: GA ČR GAP207/12/2323; GA ČR GAP305/10/0281
Institutional support: RVO:67179843 ; RVO:61388971 ; RVO:68378050
Keywords : Escherichia-Coli * Endonuclease ecor1241 * HSDR subunit * RECBCD enzyme * proteins * genes * helicase * sequence * family * domain
Subject RIV: CE - Biochemistry
Impact factor: 3.057, year: 2015
Permanent Link: http://hdl.handle.net/11104/0253781 - 7.0437252 - ÚVGZ 2015 RIV US eng J - Journal Article
Sinha, Dhiraj - Shamayeva, Katerina - Ramasubramani, V. - Řeha, David - Bialevich, V. - Khabiri, Morteza - Guzanová, Alena - Milbar, N. - Weiserová, Marie - Cséfalvay, Eva - Carey, J. - Ettrich, Rüdiger
Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I.
Journal of Molecular Modeling. Roč. 20, č. 7 (2014), s. 2334. ISSN 1610-2940. E-ISSN 0948-5023
R&D Projects: GA ČR GAP207/12/2323
Institutional support: RVO:67179843 ; RVO:61388971
Keywords : DNA restriction enzymes * Molecular modeling * QM/MM calculations * principal components analysis * E. coli * Multisubunit enzyme complex * Correlated loop motions
Subject RIV: EH - Ecology, Behaviour; EE - Microbiology, Virology (MBU-M)
Impact factor: 1.736, year: 2014
Permanent Link: http://hdl.handle.net/11104/0240850