Search results
- 1.0584639 - MBÚ 2025 RIV US eng J - Journal Article
Smirnova, Anna - Hronová, Vladislava - Mohammad, Mahabub Pasha - Herrmannová, Anna - Gunišová, Stanislava - Petráčková, Denisa - Halada, Petr - Coufal, Štěpán - Swirski, M. - Rendleman, J. - Jendruchová, Kristýna - Hatzoglou, M. - Beznosková, Petra - Vogel, C. - Valášek, Leoš Shivaya
Stem-loop-induced ribosome queuing in the uORF2/ATF4 overlap fine-tunes stress-induced human ATF4 translational control.
Cell Reports. Roč. 43, č. 4 (2024), s. 113976. ISSN 2211-1247. E-ISSN 2211-1247
R&D Projects: GA ČR(CZ) GX19-25821X; GA MŠMT(CZ) EH22_008/0004575
Research Infrastructure: CIISB III - 90242
Institutional support: RVO:61388971
Keywords : ribosome * factor 4 (ATF4) * stress respon * ORF2/ATF4 overlap
OECD category: Cell biology
Impact factor: 8.8, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2211124724003048?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0352526File Download Size Commentary Version Access Stem-loop-induced ribosome queuing in the uORF2-ATF4 overlap fine-tunes stress-induced human ATF4 translational control.pdf 2 4.1 MB Publisher’s postprint open-access
Research data: Mendeley data - 2.0582831 - MBÚ 2025 RIV US eng J - Journal Article
Vaňková Hausnerová, Viola - Shoman, Mahmoud - Kumar, Dilip - Schwarz, Marek - Modrák, Martin - Jirát Matějčková, Jitka - Mikesková, Eliška - Neva, Silva - Herrmannová, Anna - Šiková, Michaela - Halada, Petr - Novotná, I. - Pajer, J. - Valášek, Leoš Shivaya - Převorovský, M. - Krásný, Libor - Hnilicová, Jarmila
RIP-seq reveals RNAs that interact with RNA polymerase and primary sigma factors in bacteria.
Nucleic Acids Research. Roč. 52, May 8 (2024), s. 4604-4626. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT(CZ) EF18_046/0015974; GA ČR(CZ) GA23-05622S
Grant - others:AV ČR(CZ) Premium Academiae of the Academy of Sciences of the Czech Republic
Program: Akademická prémie - Praemium Academiae
Institutional support: RVO:61388971
Keywords : RIP-seq reveals * RNA polymerase * 6S RNA * Ms1 RNA
OECD category: Microbiology
Impact factor: 14.9, year: 2022
Method of publishing: Open access
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae081/7606967?login=true
Permanent Link: https://hdl.handle.net/11104/0350882File Download Size Commentary Version Access Vankova Hausnerova --seq reveals RNAs that interact with RNA polymerase... .pdf 0 5.9 MB Author´s preprint open-access - 3.0576287 - MBÚ 2024 RIV US eng J - Journal Article
Valášek, Leoš Shivaya - Kučerová, Michaela - Zeman, Jakub - Beznosková, Petra
Cysteine tRNA acts as a stop codon readthrough-inducing tRNA in the human HEK293T cell line.
RNA. Roč. 29, č. 9 (2023), s. 1379-1387. ISSN 1355-8382. E-ISSN 1469-9001
R&D Projects: GA ČR(CZ) GA20-00579S; GA ČR(CZ) GF23-08669L
Grant - others:AV ČR(CZ) Premium Academiae of the Academy of Sciences of the Czech Republic
Program: Akademická prémie - Praemium Academiae
Institutional support: RVO:61388971
Keywords : cysteine tRNA * near-cognate tRNA * readthrough-inducing tRNA * translation * stop codon readthrough
OECD category: Microbiology
Impact factor: 4.5, year: 2022
Method of publishing: Limited access
https://rnajournal.cshlp.org/content/29/9/1379
Permanent Link: https://hdl.handle.net/11104/0345856 - 4.0573646 - MBÚ 2024 RIV US eng J - Journal Article
Valášek, Leoš Shivaya - Lukeš, Julius - Paris, Zdeněk
Stops making sense - For the people?
Clinical and Translational Medicine. Roč. 13, č. 5 (2023), č. článku e1270. ISSN 2001-1326. E-ISSN 2001-1326
R&D Projects: GA ČR(CZ) GA20-00579S; GA ČR(CZ) GA20-11585S; GA ČR(CZ) GA22-14356S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : tRNA * therapeutics
OECD category: Microbiology; Biochemistry and molecular biology (BC-A)
Impact factor: 10.6, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1002/ctm2.1270
Permanent Link: https://hdl.handle.net/11104/0344037 - 5.0573561 - MBÚ 2024 RIV GB eng J - Journal Article
Kachale, A. - Pavlíková, Zuzana - Nenarokova, A. - Roithová, Adriana - Durante, I. M. - Miletínová, Petra - Záhonová, K. - Nenarokov, S. - Votýpka, J. - Horáková, Eva - Ross, R. L. - Yurchenko, V. - Beznosková, Petra - Paris, Z. - Valášek, Leoš Shivaya - Lukeš, J.
Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment.
Nature. Roč. 613, č. 7965 (2023), s. 751-758. ISSN 0028-0836. E-ISSN 1476-4687
R&D Projects: GA ČR(CZ) GA20-00579S
Grant - others:AV ČR(CZ) Premium Academiae of the Academy of Sciences of the Czech Republic
Program: Akademická prémie - Praemium Academiae
Research Infrastructure: e-INFRA CZ - 90140; Czech-BioImaging II - 90129
Institutional support: RVO:61388971
Keywords : nuclear genetic-code * identity elements * translation * recognition * degradation * evolution * nonsense * binds
OECD category: Biochemistry and molecular biology
Impact factor: 64.8, year: 2022
Method of publishing: Limited access
https://www.nature.com/articles/s41586-023-06260-9
Permanent Link: https://hdl.handle.net/11104/0343987 - 6.0570248 - MBÚ 2024 RIV NL eng J - Journal Article
Dubiel, D. - da Fonseca, P. C. A. - Valášek, Leoš Shivaya - Schulze-Niemand, E. - Naumann, M.
ZOMES: Cell physiology determined by PCI complexes and protein turnover.
Biochimica Et Biophysica Acta-Molecular Cell Research. Roč. 1870, č. 2 (2023), č. článku 119402. ISSN 0167-4889. E-ISSN 1879-2596
EU Projects: European Commission(CZ) CA201131870
Institutional support: RVO:61388971
Keywords : Cell * complexes * protein
OECD category: Microbiology
Impact factor: 5.1, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S016748892200194X?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0343564 - 7.0562220 - MBÚ 2023 RIV GB eng J - Journal Article
Wagner, Susan - Bohlen, J. - Herrmannová, Anna - Jelínek, Jan - Preiss, T. - Valášek, Leoš Shivaya - Teleman, A. A.
Selective footprinting of 40S and 80S ribosome subpopulations (Sel-TCP-seq) to study translation and its control.
Nature Protocols. Roč. 17, č. 10 (2022), s. 2139-2187. ISSN 1754-2189. E-ISSN 1750-2799
R&D Projects: GA ČR(CZ) GX19-25821X; GA MŠMT(CZ) LM2018131
Institutional support: RVO:61388971
Keywords : rofiling revealsin-vivolocal translationformaldehydeinitiationelongationdynamics * rofiling reveals * in-vivo * local translation * formaldehyde * initiation * elongation * dynamics
OECD category: Microbiology
Impact factor: 14.8, year: 2022
Method of publishing: Limited access
https://www.nature.com/articles/s41596-022-00708-4
Permanent Link: https://hdl.handle.net/11104/0334654 - 8.0547363 - MBÚ 2022 RIV GB eng J - Journal Article
Mohammad, Mahabub Pasha - Smirnova, Anna - Gunišová, Stanislava - Valášek, Leoš Shivaya
eIF4G is retained on ribosomes elongating and terminating on short upstream ORFs to control reinitiation in yeast.
Nucleic Acids Research. Roč. 49, č. 15 (2021), s. 8743-8756. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GX19-25821X
Institutional support: RVO:61388971
Keywords : eukaryotic translation initiation * messenger-rna * re-initiation * promote * gcn4 * complex * 4g * binding * domain * perspective
OECD category: Microbiology
Impact factor: 19.160, year: 2021
Method of publishing: Open access
https://academic.oup.com/nar/article/49/15/8743/6342458
Permanent Link: http://hdl.handle.net/11104/0323605 - 9.0543393 - MBÚ 2022 RIV GB eng J - Journal Article
Beznosková, Petra - Bidou, L. - Namy, O. - Valášek, Leoš Shivaya
Increased expression of tryptophan and tyrosine tRNAs elevates stop codon readthrough of reporter systems in human cell lines.
Nucleic Acids Research. Roč. 49, č. 9 (2021), s. 5202-5215. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA20-00579S; GA ČR(CZ) GA18-02014S
Institutional support: RVO:61388971
Keywords : cognate transfer-rnas * messenger-rna * termination codons * genetic-code * translation * cancer * nonsense * downstream * efficiency * sense
OECD category: Microbiology
Impact factor: 19.160, year: 2021
Method of publishing: Open access
https://academic.oup.com/nar/article/49/9/5202/6261788?login=true
Permanent Link: http://hdl.handle.net/11104/0320610 - 10.0537296 - MBÚ 2021 RIV US eng J - Journal Article
Bochler, A. - Querido, J. B. - Prilepskaja, Terezie - Soufari, H. - Simonetti, A. - Del Cistia, M. L. - Kuhn, L. - Ribeiro, A. R. - Valášek, Leoš Shivaya - Hashem, Y.
Structural Differences in Translation Initiation between Pathogenic Trypanosomatids and Their Mammalian Hosts.
Cell Reports. Roč. 33, č. 12 (2020), č. článku 108534. ISSN 2211-1247. E-ISSN 2211-1247
R&D Projects: GA ČR(CZ) GX19-25821X
Institutional support: RVO:61388971
Keywords : translation initiation * the 43S pre-initiation complex * cryo-EM * Trypanosoma cruzi * k-DDX60 * eIF1 * eIF2 * eIF3 * eIF5-CTD * es6 s
OECD category: Microbiology
Impact factor: 9.423, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2211124720315230
Permanent Link: http://hdl.handle.net/11104/0315026