Search results
- 1.0573968 - MBÚ 2024 RIV NL eng J - Journal Article
Osičková, Adriana - Knoblochová, Šárka - Bumba, Ladislav - Man, Petr - Kalaninová, Zuzana - Lepesheva, Anna - Jurnečka, David - Čížková, Monika - Biedermannová, Lada - Goldsmith, J. A. - Maynard, J. A. - McLellan, J. S. - Osička, Radim - Šebo, Peter - Mašín, Jiří
A conserved tryptophan in the acylated segment of RTX toxins controls their βinf2/inf integrin–independent cell penetration.
Journal of Biological Chemistry. Roč. 299, č. 8 (2023), č. článku 104978. ISSN 0021-9258. E-ISSN 1083-351X
R&D Projects: GA ČR(CZ) GA22-01558S; GA ČR(CZ) GA22-01558S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT(CZ) EF18_046/0015974; GA ČR(CZ) GX19-27630X
Research Infrastructure: e-INFRA CZ - 90140; EATRIS-CZ IV - 90253; CIISB III - 90242
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : acylated segment * adenylate cyclase toxin * cytotoxicity * hydrogen/deuterium exchange * RTX toxin * thermal stability * tryptophan residue * α-hemolysin * β integrins 2
OECD category: Microbiology
Impact factor: 4.8, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0021925823020069?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0344352 - 2.0569019 - BTÚ 2024 RIV GB eng J - Journal Article
Huličiak, Maroš - Biedermannová, Lada - Berdár, Daniel - Herynek, Štěpán - Kolářová, Lucie - Tomala, Jakub - Mikulecký, Pavel - Schneider, Bohdan
Combined in vitro and cell-based selection display method producing specific binders against IL-9 receptor in high yields.
FEBS Journal. Roč. 290, č. 11 (2023), s. 2993-3005. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT LX22NPO5102; GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) EF18_046/0015974; GA ČR(CZ) GA20-13029S
Institutional support: RVO:86652036
Keywords : directed evolution * interleukin 9 receptor alpha * protein scaffolds * ribosome display * yeast display
OECD category: Biochemistry and molecular biology
Impact factor: 5.4, year: 2022
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16726
Permanent Link: https://hdl.handle.net/11104/0340309 - 3.0560262 - BTÚ 2023 RIV GB eng J - Journal Article
Biedermannová, Lada - Černý, Jiří - Malý, Michal - Nekardová, Michaela - Schneider, Bohdan
Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks.
Acta Crystallographica Section D-Biological Crystallography. Roč. 78, AUG 1 2022 (2022), s. 1032-1045. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) LM2018131
Institutional support: RVO:86652036
Keywords : DNA hydration * water * dinucleotide fragments * knowledge-based prediction * WatNA
OECD category: Analytical chemistry
Impact factor: 2.2, year: 2022
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798322006234
Permanent Link: https://hdl.handle.net/11104/0333870 - 4.0547149 - MBÚ 2022 RIV CH eng J - Journal Article
Biedermann, David - Hurtová, Martina - Benada, Oldřich - Valentová, Kateřina - Biedermannová, Lada - Křen, Vladimír
Continuous diastereomeric kinetic resolution—silybins a and b.
Catalysts. Roč. 11, č. 9 (2021), č. článku 1106. E-ISSN 2073-4344
R&D Projects: GA MŠMT(CZ) LTC18071; GA ČR GA21-00551S
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : Silybin * Silybum marianum * Silymarin * milk thistle * lipase * Novozym 435 * diastereomers * resolution * flow reaction
OECD category: Organic chemistry; Physical chemistry (BTO-N)
Impact factor: 4.501, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2073-4344/11/9/1106
Permanent Link: http://hdl.handle.net/11104/0323472 - 5.0543851 - MBÚ 2022 RIV GB eng J - Journal Article
Biedermann, David - Hurtová, Martina - Biedermannová, Lada - Valentová, Kateřina - Křen, Vladimír
Flavonolignans from silymarin do not intercalate into DNA: Rebuttal of data published in the paper J. Mol. Recognit. e2812 (2019).
Journal of Molecular Recognition. Roč. 34, č. 7 (2021), č. článku 2888. ISSN 0952-3499. E-ISSN 1099-1352
R&D Projects: GA MŠMT(CZ) LTC18071
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : Flavonolignans * silymarin
OECD category: Medicinal chemistry; Biophysics (BTO-N)
Impact factor: 2.891, year: 2021
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/abs/10.1002/jmr.2888
Permanent Link: http://hdl.handle.net/11104/0320966 - 6.0542184 - BTÚ 2022 RIV CH eng J - Journal Article
Pham, Phuong Ngoc - Huličiak, Maroš - Biedermannová, Lada - Černý, Jiří - Charnavets, Tatsiana - Fuertes, Gustavo - Herynek, Štěpán - Kolářová, Lucie - Kolenko, Petr - Pavlíček, Jiří - Zahradník, Jiří - Mikulecký, Pavel - Schneider, Bohdan
Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution.
Viruses. Roč. 13, č. 2 (2021), č. článku 190. E-ISSN 1999-4915
R&D Projects: GA ČR(CZ) GA16-20507S; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2018127
Institutional support: RVO:86652036
Keywords : directed evolution * protein scaffold * protein engineering * computational saturation * ribosome display * interleukin-10
OECD category: Virology
Impact factor: 5.818, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1999-4915/13/2/190
Permanent Link: http://hdl.handle.net/11104/0319662 - 7.0535408 - BTÚ 2021 RIV GB eng J - Journal Article
Černý, Jiří - Božíková, Paulina - Malý, Michal - Tykač, Michal - Biedermannová, Lada - Schneider, Bohdan
Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org.
Acta Crystallographica Section D-Structural Biology. Roč. 76, SEP 1 2020 (2020), s. 805-813. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : secondary structure * rna * nomenclature * recognition * refinement
OECD category: Biochemical research methods
Impact factor: 7.652, year: 2020
Method of publishing: Open access
https://journals.iucr.org/d/issues/2020/09/00/ir5007/ir5007.pdf
Permanent Link: http://hdl.handle.net/11104/0313442 - 8.0521889 - ÚOCHB 2021 RIV GB eng J - Journal Article
Pachl, Petr - Kapešová, Jana - Brynda, Jiří - Biedermannová, Lada - Pelantová, Helena - Bojarová, Pavla - Křen, Vladimír - Řezáčová, Pavlína - Kotík, Michael
Rutinosidase from Aspergillus niger: crystal structure and insight into the enzymatic activity.
FEBS Journal. Roč. 287, č. 15 (2020), s. 3315-3327. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA ČR(CZ) GA19-00091S; GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963 ; RVO:61388971 ; RVO:86652036
Keywords : catalytic mechanism * diglycosidase * rutin * SIRAS * X-ray crystallography
OECD category: Biochemistry and molecular biology; Biophysics (MBU-M)
Impact factor: 5.542, year: 2020
Method of publishing: Limited access
https://febs.onlinelibrary.wiley.com/doi/full/10.1111/febs.15208
Permanent Link: http://hdl.handle.net/11104/0306434 - 9.0480545 - BTÚ 2018 RIV GB eng J - Journal Article
Černý, Jiří - Schneider, Bohdan - Biedermannová, Lada
WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations.
Physical Chemistry Chemical Physics. Roč. 19, č. 26 (2017), s. 17094-17102. ISSN 1463-9076. E-ISSN 1463-9084
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015047; GA ČR GPP205/12/P729
Grant - others:GA MŠk(CZ) LM2010005
Institutional support: RVO:86652036
Keywords : EMPIRICAL DISPERSION TERM * WATER-MOLECULES * CRYSTAL-STRUCTURES
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 3.906, year: 2017
Permanent Link: http://hdl.handle.net/11104/0276316 - 10.0465926 - BTÚ 2017 RIV NL eng J - Journal Article
Biedermannová, Lada - Schneider, Bohdan
Hydration of proteins and nucleic acids: Advances in experiment and theory. A review.
Biochimica et Biophysica Acta-General Subjects. Roč. 1860, č. 9 (2016), s. 1821-1835. ISSN 0304-4165. E-ISSN 1872-8006
R&D Projects: GA ČR GPP205/12/P729; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : Structural biology * Hydration * Biomolecular recognition * Molecular biophysics * Bioinformatics
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 4.702, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264393