Search results
- 1.0424754 - ÚOCHB 2014 RIV NL eng J - Journal Article
Emmer, J. - Vavrinská, A. - Sychrovský, Vladimír - Benda, Ladislav - Kříž, Z. - Koča, J. - Boelens, R. - Sklenář, V. - Trantírek, L.
Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N-15 chemical shielding anisotropy tensors.
Journal of Biomolecular NMR. Roč. 55, č. 1 (2013), s. 59-70. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA ČR GAP205/10/0228
Grant - others:CEITEC(XE) CZ.1.05/1.1.00/02.0068
Institutional support: RVO:61388963
Keywords : CSA * phosphorylation * amidic nitrogen * serine * threonine * tyrosine * protein * NMR
Subject RIV: CE - Biochemistry
Impact factor: 3.305, year: 2013
Permanent Link: http://hdl.handle.net/11104/0230810 - 2.0382846 - ÚOCHB 2013 RIV US eng J - Journal Article
Šebera, Jakub - Trantírek, L. - Tanaka, Y. - Sychrovský, Vladimír
Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-OxoG with the hOGG1 DNA Repair Protein.
Journal of Physical Chemistry B. Roč. 116, č. 41 (2012), s. 12535-12544. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR GAP205/10/0228
Grant - others:AV ČR(CZ) M200551205
Institutional research plan: CEZ:AV0Z40550506
Keywords : hOGG1 enzyme * DFT * glycosidic bond cleavage
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.607, year: 2012
Permanent Link: http://hdl.handle.net/11104/0007200 - 3.0381618 - BC 2013 RIV GB eng J - Journal Article
Fessl, Tomáš - Adamec, František - Polívka, Tomáš - Foldynová-Trantírková, Silvie - Vácha, František - Trantírek, L.
Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET.
Nucleic Acids Research. Roč. 40, č. 16 (2012), s. 10. ISSN 0305-1048. E-ISSN 1362-4962
Institutional research plan: CEZ:AV0Z50510513; CEZ:AV0Z60220518
Keywords : in-cell FRET * fluorescence * DNA * nucleic acid * ATTO * in vivo
Subject RIV: BO - Biophysics
Impact factor: 8.278, year: 2012
Permanent Link: http://hdl.handle.net/11104/0212047 - 4.0379079 - ÚOCHB 2013 RIV US eng J - Journal Article
Sychrovský, Vladimír - Sochorová Vokáčová, Zuzana - Trantírek, L.
Guanine Bases in DNA G-Quadruplex Adopt Nonplanar Geometries Owing to Solvation and Base Pairing.
Journal of Physical Chemistry A. Roč. 116, č. 16 (2012), s. 4144-4151. ISSN 1089-5639. E-ISSN 1520-5215
R&D Projects: GA ČR GAP205/10/0228
Institutional research plan: CEZ:AV0Z40550506
Keywords : pyramidalization * nonplanarity * G-quadruplex * DNA * solvent effect
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.771, year: 2012
Permanent Link: http://hdl.handle.net/11104/0007101 - 5.0368847 - BFÚ 2012 RIV US eng J - Journal Article
Fiala, R. - Špačková, Naďa - Foldynová-Trantírková, Silvie - Šponer, J. - Sklenář, V. - Trantírek, L.
NMR cross-correlated relaxation rates reveal ion coordination sites in DNA.
Journal of the American Chemical Society. Roč. 133, č. 35 (2011), s. 13790-13793. ISSN 0002-7863. E-ISSN 1520-5126
R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GAP208/11/1822
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702; CEZ:AV0Z60220518
Keywords : NMR * molecular dynamics * ions
Subject RIV: BO - Biophysics
Impact factor: 9.907, year: 2011
Permanent Link: http://hdl.handle.net/11104/0203073 - 6.0364917 - BC 2012 RIV GB eng J - Journal Article
Hansel, R. - Loehr, F. - Foldynová-Trantírková, Silvie - Bamberg, E. - Trantírek, L. - Doetsch, V.
The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions.
Nucleic Acids Research. Roč. 39, č. 13 (2011), 5768-5775. ISSN 0305-1048. E-ISSN 1362-4962
Institutional research plan: CEZ:AV0Z60220518
Keywords : MOLECULAR CROWDING CONDITIONS * INTRAMOLECULAR G-QUADRUPLEX * CELL NMR-SPECTROSCOPY * C-MYC PROMOTER * K+ SOLUTION * DNA * STABILITY * PROTEIN * POLYMORPHISM * HYDRATION
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 8.026, year: 2011
Permanent Link: http://hdl.handle.net/11104/0200279 - 7.0355236 - BFÚ 2011 RIV US eng J - Journal Article
Krejčí, Pavel - Murakami, S. - Procházková, J. - Trantírek, L. - Chlebová, K. - Ouyang, Z. - Aklian, A. - Smutný, J. - Bryja, Vítězslav - Kozubík, Alois - Wilcox, W.R.
NF449 is a novel inhibitor of fibroblast growth factor receptor 3 (FGFR3) signaling active in chondrocytes and multiple myeloma cells.
Journal of Biological Chemistry. Roč. 285, č. 27 (2010), s. 20644-20653. ISSN 0021-9258. E-ISSN 1083-351X
Grant - others:GA ČR(CZ) GA301/09/0587
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : NF449 * fibroblast growth factor receptor * antagonist
Subject RIV: BO - Biophysics
Impact factor: 5.328, year: 2010
Permanent Link: http://hdl.handle.net/11104/0194054