Search results
- 1.0540647 - BTÚ 2021 RIV SE eng J - Journal Article
Naraine, Ravindra - Abaffy, Pavel - Šídová, Monika - Tománková, Silvie - Pocherniaieva, K. - Smolík, Ondřej - Kubista, Mikael - Pšenička, M. - Šindelka, Radek
NormQ: RNASeq normalization based on RT-qPCR derived size factors.
Computational and Structural Biotechnology Journal. Roč. 18, č. 2020 (2020), s. 1173-1181. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR GA17-24441S; GA ČR(CZ) GA19-11313S; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : seq * tomography * Transcriptomics * RNASeq * Normalization * TOMOSeq * DESeq * Median-of-ratios
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302737?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0318266 - 2.0523050 - BTÚ 2020 RIV NL eng J - Journal Article
Šídová, Monika - Tománková, Silvie - Abaffy, Pavel - Kubista, Mikael - Šindelka, Radek
Effects of post-mortem and physical degradation on RNA integrity and quality.
Biomolecular Detection and Quantification. Roč. 5, September 2015 (2015), s. 3-9. ISSN 2214-7535
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : Degradation * RNA integrity * RNA quality * rqi
OECD category: Biochemistry and molecular biology
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2214753515300048?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0307459 - 3.0510908 - ÚŽFG 2020 RIV US eng J - Journal Article
Bartoš, Oldřich - Röslein, Jan - Kotusz, J. - Pačes, Jan - Pekárik, L. - Petrtýl, Miloslav - Halačka, Karel - Štefková Kašparová, Eva - Mendel, Jan - Boron, A. - Juchno, D. - Leska, A. - Jablonska, O. - Beneš, V. - Šídová, Monika - Janko, Karel
The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids.
Molecular Biology and Evolution. Roč. 36, č. 9 (2019), s. 1902-1920. ISSN 0737-4038. E-ISSN 1537-1719
R&D Projects: GA MŠMT EF15_003/0000460; GA ČR GA13-12580S; GA ČR(CZ) GA17-09807S
Institutional support: RVO:67985904 ; RVO:68081766 ; RVO:86652036
Keywords : asexuality * polyploidy * hybridization * tissue-specific gene expression * expression-level dominance * cis-trans-regulation
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology; Zoology (UBO-W); Biochemistry and molecular biology (BTO-N)
Impact factor: 11.062, year: 2019
Method of publishing: Open access
https://academic.oup.com/mbe/article/36/9/1902/5488194
Permanent Link: http://hdl.handle.net/11104/0301276 - 4.0508015 - BTÚ 2020 RIV US eng J - Journal Article
Pocherniaieva, K. - Šídová, Monika - Havelka, M. - Saito, T. - Pšenička, M. - Šindelka, Radek - Kašpar, V.
Comparison of oocyte mRNA localization patterns in sterlet Acipenser ruthenus and African clawed frog Xenopus laevis.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution Additional Title Information. Roč. 330, č. 3 (2018), s. 181-187. ISSN 1552-5007. E-ISSN 1552-5015
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : acipenser ruthenus * primordial Germ Cells * qPCR * RNA localization
OECD category: Developmental biology
Impact factor: 1.716, year: 2018
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/full/10.1002/jez.b.22802
Permanent Link: http://hdl.handle.net/11104/0298991 - 5.0496977 - BTÚ 2019 RIV GB eng J - Journal Article
Šindelka, Radek - Abaffy, Pavel - Qu, Y. - Tománková, Silvie - Šídová, Monika - Naraine, Ravindra - Kolář, Michal - Peuchen, E. - Sun, L. - Dovichi, N. - Kubista, Mikael
Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan.
Scientific Reports. Roč. 8, MAY 29 2018 (2018), č. článku 8315. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GA16-07500S; GA MŠMT(CZ) LH15074; GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036 ; RVO:68378050
Keywords : CELL MASS-SPECTROMETRY * BICOID MESSENGER-RNA * SAMPLE PREPARATION
OECD category: Other biological topics; Other biological topics (UMG-J)
Impact factor: 4.011, year: 2018
Permanent Link: http://hdl.handle.net/11104/0289597 - 6.0472500 - BTÚ 2017 RIV GB eng J - Journal Article
Tlapáková, T. - Nguyen, T.M.X. - Vegrichtova, M. - Šídová, Monika - Strnadova, K. - Bláhová, M. - Krylov, V.
Identification and characterization of Xenopus tropicalis common progenitors of Sertoli and peritubular myoid cell lineages.
Biology Open. Roč. 5, č. 9 (2016), s. 1275-1282. ISSN 2046-6390. E-ISSN 2046-6390
R&D Projects: GA MŠMT LK21305; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : Testicular somatic cells * Xenopus tropicalis * Migration potential
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 2.095, year: 2016
Permanent Link: http://hdl.handle.net/11104/0269803 - 7.0457855 - BTÚ 2016 RIV GB eng J - Journal Article
Korenková, Vlasta - Scott, J. - Novosadová, Vendula - Jindřichová, Marie - Langerová, Lucie - Švec, David - Šídová, Monika - Sjoback, R.
Pre-amplification in the context of high-throughput qPCR gene expression experiment.
B M C Molecular Biology. Roč. 16, č. 5 (2015). ISSN 1471-2199. E-ISSN 1471-2199
R&D Projects: GA ČR(CZ) GAP304/12/1585; GA ČR(CZ) GA15-08239S; GA ČR GA13-02154S; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : High-throughput qPCR * Gene expression * Exponential pre-amplification
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 2.500, year: 2015
Permanent Link: http://hdl.handle.net/11104/0258216 - 8.0446657 - BTÚ 2016 RIV GB eng J - Journal Article
Šídová, Monika - Šindelka, Radek - Castoldi, M. - Benes, V. - Kubista, Mikael
Intracellular microRNA profiles form in the Xenopus laevis oocyte that may contribute to asymmetric cell division.
Scientific Reports. Roč. 5, č. 11157 (2015). ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : VG1 MESSENGER-RNA * VEGETAL CORTEX * FROG OOCYTE
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 5.228, year: 2015
Permanent Link: http://hdl.handle.net/11104/0248637 - 9.0396452 - BTÚ 2014 RIV GB eng J - Journal Article
Flachsová, Monika - Šindelka, Radek - Kubista, Mikael
Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry.
Scientific Reports. Roč. 3, č. 2278 (2013). ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA MŠMT ED1.1.00/02.0109; GA ČR GA301/09/1752
Institutional research plan: CEZ:AV0Z50520701
Keywords : DORSAL-VENTRAL AXIS * CORTICAL ROTATION * PROSPECTIVE AREAS
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 5.078, year: 2013
Permanent Link: http://hdl.handle.net/11104/0224411File Download Size Commentary Version Access Single blastomere expression.pdf 7 1.8 MB Publisher’s postprint require Single blastomere expression.pdf 1 1.8 MB Publisher’s postprint require - 10.0346483 - BTÚ 2011 RIV US eng J - Journal Article
Šindelka, R. - Šídová, Monika - Švec, David - Kubista, Mikael
Spatial expression profiles in the Xenopus laevis oocytes measured with qPCR tomography.
Methods. Roč. 51, - (2010), s. 87-91. ISSN 1046-2023. E-ISSN 1095-9130
R&D Projects: GA AV ČR(CZ) IAA500970904; GA ČR GA301/09/1752
Institutional research plan: CEZ:AV0Z50520701
Keywords : Xenopus * Oocyte * qPCR tomography
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 4.527, year: 2010
Permanent Link: http://hdl.handle.net/11104/0187504