Search results
- 1.0574672 - MBÚ 2024 RIV US eng J - Journal Article
Navarrete, Kevin Munoz - Bumba, Ladislav - Prudnikova, T. - Malcová, Ivana - Allsop Romero, Tania - Šebo, Peter - Kamanová, Jana
BopN is a Gatekeeper of the Bordetella Type III Secretion System.
Microbiology Spectrum. Roč. 11, č. 3 (2023), č. článku 0411222. ISSN 2165-0497. E-ISSN 2165-0497
R&D Projects: GA ČR(CZ) GA21-05466S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT(CZ) EF18_046/0016045; GA MŠMT(CZ) LM2023053
Grant - others:AV ČR(CZ) LQ200202001
Program: Prémie Lumina quaeruntur
Institutional support: RVO:61388971
Keywords : BopN * Bordetella * gatekeeper * type III secretion system
OECD category: Microbiology
Impact factor: 3.7, year: 2022
Method of publishing: Open access
https://journals.asm.org/doi/10.1128/spectrum.04112-22
Permanent Link: https://hdl.handle.net/11104/0345043File Download Size Commentary Version Access BopN is Gatekeeper.pdf 0 2.5 MB Publisher’s postprint open-access - 2.0572377 - BC 2024 RIV GB eng J - Journal Article
Kascaková, B. - Kotál, Jan - Havlíčková, P. - Vopatková, V. - Prudnikova, T. - Grinkevich, P. - Kutý, M. - Chmelař, J. - Smatanová, I.K.
Conformational transition of the Ixodes ricinus salivary serpin Iripin-4.
Acta Crystallographica Section D-Structural Biology. Roč. 79, MAY (2023), s. 409-419. ISSN 2059-7983. E-ISSN 2059-7983
Institutional support: RVO:60077344
Keywords : serpins * Iripin-4 * X-ray structure * native conformation * cleaved conformation * Ixodes ricinus
OECD category: Microbiology
Impact factor: 2.2, year: 2022
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798323002322
Permanent Link: https://hdl.handle.net/11104/0345554 - 3.0547429 - MBÚ 2022 RIV CH eng J - Journal Article
Shaposhnikova, Anastasiia - Kutý, M. - Chaloupková, R. - Damborský, J. - Smatanová, I.K. - Minofar, Babak - Prudnikova, T.
Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids.
Crystals. Roč. 11, č. 9 (2021), č. článku 1052. ISSN 2073-4352. E-ISSN 2073-4352
R&D Projects: GA MŠMT(CZ) LM2015047
Research Infrastructure: e-INFRA CZ - 90140; RECETOX RI - 90121
Institutional support: RVO:61388971
Keywords : haloalkane dehalogenase (HLD) * ionic liquids (ILs) * molecular dynamics (MD) simulations * protein stability * 2-hydroxyethylammonium acetate ([ETA][ACC]) * 1-butyl-3-methylimidazolium methyl sulfate ([EMIM][CHS])
OECD category: Biophysics
Impact factor: 2.670, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2073-4352/11/9/1052
Permanent Link: http://hdl.handle.net/11104/0323664 - 4.0539596 - ÚMG 2021 RIV SE eng J - Journal Article
Marek, M. - Chaloupková, R. - Prudnikova, T. - Sato, Y. - Řezáčová, Pavlína - Nagata, Y. - Smatanová, I.K. - Damborský, J.
Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family.
Computational and Structural Biotechnology Journal. Roč. 18, June (2020), s. 1352-1362. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68378050
Keywords : Haloalkane dehalogenase (HLD) * Biocatalysis * Loop-helix transplantation * X-ray crystallography * Enantioselectivity * Access tunnel * Enzyme engineering * Protein design
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302828?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0317304 - 5.0522743 - ÚMG 2020 RIV GB eng J - Journal Article
Havlíčková, P. - Brinsa, V. - Brynda, Jiří - Pachl, P. - Prudnikova, T. - Mesters, J. R. - Kaščáková, B. - Kutý, M. - Pusey, M. L. - Ng, J. D. - Řezáčová, Pavlína - Smatanová, I.K.
A novel structurally characterized haloacid dehalogenase superfamily phosphatase from Thermococcus thioreducens with diverse substrate specificity.
Acta Crystallographica Section D-Structural Biology. Roč. 75, August (2019), s. 743-752. ISSN 2059-7983. E-ISSN 2059-7983
Institutional support: RVO:68378050
Keywords : HAD superfamily * hypothetical phosphatase * crystal structure * docking * phosphatase assay
OECD category: Biophysics
Impact factor: 5.266, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2059798319009586
Permanent Link: http://hdl.handle.net/11104/0307187 - 6.0511267 - ÚOCHB 2020 RIV CH eng J - Journal Article
Chrást, L. - Tratsiak, Katsiaryna - Planas-Iglesias, J. - Daniel, L. - Prudnikova, T. - Brezovský, J. - Bednář, D. - Kutá Smatanová, I. - Chaloupková, R. - Damborský, J.
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.
Microorganisms. Roč. 7, č. 11 (2019), č. článku 498. E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * thermostability * psychrophile * access tunnel * dimer * catalytic pentad * enantiselectivity
OECD category: Biochemistry and molecular biology
Impact factor: 4.152, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2076-2607/7/11/498
Permanent Link: http://hdl.handle.net/11104/0301587 - 7.0505284 - ÚOCHB 2020 RIV GB eng J - Journal Article
Tratsiak, Katsiaryna - Prudnikova, T. - Drienovská, I. - Damborský, J. - Brynda, Jiří - Pachl, Petr - Kutý, M. - Chaloupková, R. - Řezáčová, Pavlína - Kutá Smatanová, I.
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 75, č. 5 (2019), s. 324-331. E-ISSN 2053-230X
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * alpha/beta-hydrolase * X-ray diffraction * psychrophiles * structural analysis * Psychrobacter cryohalolentis
OECD category: Biochemistry and molecular biology
Impact factor: 0.968, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2053230X19002796
Permanent Link: http://hdl.handle.net/11104/0296758 - 8.0430522 - ÚOCHB 2015 RIV DK eng J - Journal Article
Chaloupková, R. - Prudnikova, T. - Řezáčová, Pavlína - Prokop, Z. - Koudeláková, T. - Daniel, L. - Březovský, J. - Ikeda-Ohtsubo, W. - Sato, Y. - Kutý, Michal - Nagata, Y. - Kutá-Smatanová, Ivana - Damborský, J.
Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Acta Crystallographica Section D-Biological Crystallography. Roč. 70, July (2014), s. 1884-1897. ISSN 0907-4449
Grant - others:GA ČR(CZ) GAP207/12/0775; GA MŠk(CZ) LO1214; GA MŠk(CZ) LM2010005
Program: GA
Institutional support: RVO:61388963 ; RVO:67179843
Keywords : haloalkane dehalogenase * halide-binding site * catalytic activity * substrate specificity * enzyme stability
Subject RIV: CE - Biochemistry
Impact factor: 7.232, year: 2013
Permanent Link: http://hdl.handle.net/11104/0235571 - 9.0372330 - ÚVGZ 2012 RIV US eng J - Journal Article
Prudnikova, T. - Chaloupková, R. - Sato, Y. - Nagata, Y. - Degtjarik, O. - Kutý, Michal - Řezáčová, Pavlína - Damborský, J. - Kutá-Smatanová, Ivana
Development of a Crystallization Protocol for the DbeA1 Variant of Novel Haloalkane Dehalogenase from Bradyrhizobium elkani USDA94.
Crystal Growth & Design. Roč. 11, č. 2 (2011), s. 516-519. ISSN 1528-7483. E-ISSN 1528-7505
R&D Projects: GA MŠMT(CZ) LC06010; GA MŠMT(CZ) ED1.1.00/02.0073
Institutional research plan: CEZ:AV0Z60870520; CEZ:AV0Z50520514
Keywords : crystal-structure * Japonicum * USDA110 * enzyme
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 4.720, year: 2011
Permanent Link: http://hdl.handle.net/11104/0006846 - 10.0355837 - ÚMG 2011 RIV US eng J - Journal Article
Prudnikova, T. - Gavira, J. A. - Řezáčová, Pavlína - Molina, E.P. - Hunalová, Ivana - Sviridova, E. - Schmidt, V. - Kohoutová, J. - Kutý, Michal - Kaftan, D. - Vácha, F. - Garcia-Ruiz, J. M. - Kutá-Smatanová, Ivana
Toward the crystallization of photosystem II core complex from Pisum sativum L.
Crystal Growth & Design. Roč. 10, č. 8 (2010), s. 3391-3396. ISSN 1528-7483. E-ISSN 1528-7505
R&D Projects: GA MŠMT(CZ) LC06010
Institutional research plan: CEZ:AV0Z50520514; CEZ:AV0Z50510513; CEZ:AV0Z60870520; CEZ:AV0Z40550506
Keywords : crystal-structure * cyanobacterial * elongatus
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 4.390, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006317