Search results
- 1.0556370 - FGÚ 2023 RIV FR eng J - Journal Article
Jůza, R. - Vojtěchová, I. - Štefková-Mazochová, K. - Dehaen, W. - Petrásek, T. - Prchal, L. - Kobrlová, T. - Janoušek, J. - Vlček, P. - Mezeiová, E. - Svozil, D. - Zdarová Karasová, J. - Pejchal, J. - Stark, H. - Satala, G. - Bojarski, A. J. - Kubacka, M. - Mogilski, S. - Randáková, Alena - Musílek, K. - Soukup, O. - Korábečný, J.
Novel D-2/5-HT receptor modulators related to cariprazine with potential implication to schizophrenia treatment.
European Journal of Medicinal Chemistry. Roč. 232, Mar 15 (2022), č. článku 114193. ISSN 0223-5234. E-ISSN 1768-3254
Institutional support: RVO:67985823
Keywords : aripiprazole * cariprazine * dopamine type 2 receptor * drug development * serotonin receptor type 3 * schizophrenia * 1,4-Di-substituted aromatic piperazines * antipsychotic
OECD category: Pharmacology and pharmacy
Impact factor: 6.7, year: 2022
Method of publishing: Limited access
https://doi.org/10.1016/j.ejmech.2022.114193
Permanent Link: http://hdl.handle.net/11104/0330742 - 2.0499565 - BTÚ 2019 RIV GB eng J - Journal Article
Schneider, Bohdan - Božíková, Paulina - Nečasová, Iva - Čech, P. - Svozil, D. - Černý, Jiří
A DNA structural alphabet provides new insight into DNA flexibility.
Acta Crystallographica Section D-Structural Biology. Roč. 74, JAN 2018 (2018), s. 52-64. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015047
Grant - others:GA MŠk(CZ) EF16_013/0001777
Program: EF - Operační program výzkum, vývoj, vzdělávání (2014 - 2020)
Institutional support: RVO:86652036
Keywords : DNA structure * X-ray structure * NMR structure
OECD category: Biochemistry and molecular biology
Impact factor: 3.227, year: 2018
Permanent Link: http://hdl.handle.net/11104/0291765 - 3.0484505 - BTÚ 2018 RIV CH eng J - Journal Article
Schneider, Bohdan - Božíková, Paulina - Čech, P. - Svozil, D. - Černý, Jiří
A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle.
Genes. Roč. 8, č. 10 (2017), č. článku 278. E-ISSN 2073-4425
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
Grant - others:GA MŠk(CZ) EF16_013/0001777
Program: EF - Operační program výzkum, vývoj, vzdělávání (2014 - 2020)
Institutional support: RVO:86652036
Keywords : DNA * DNA-protein recognition * transcription factors
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 3.191, year: 2017
Permanent Link: http://hdl.handle.net/11104/0281849 - 4.0431254 - BTÚ 2015 RIV GB eng J - Journal Article
Schneider, Bohdan - Černý, Jiří - Svozil, D. - Čech, P. - Gelly, J.-Ch. - de Brevern, A.G.
Bioinformatic analysis of the protein/DNA interface.
Nucleic Acids Research. Roč. 42, č. 5 (2014), s. 3381-3394. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT(CZ) MEB021032; GA ČR GAP305/12/1801; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional research plan: CEZ:AV0Z50520701
Keywords : DNA-BINDING-SITES * STRUCTURE-BASED PREDICTION * NUCLEIC ACID RECOGNITION
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 9.112, year: 2014
Permanent Link: http://hdl.handle.net/11104/0235832File Download Size Commentary Version Access Schneider_NAR_42_3381_14.pdf 8 7.2 MB Publisher’s postprint require - 5.0394810 - BTÚ 2014 RIV GB eng J - Journal Article
Čech, P. - Kukal, J. - Černý, Jiří - Schneider, Bohdan - Svozil, D.
Automatic workflow for the classification of local DNA conformations.
BMC Bioinformatics. Roč. 14, č. 205 (2013). ISSN 1471-2105. E-ISSN 1471-2105
R&D Projects: GA ČR GAP305/12/1801
Institutional research plan: CEZ:AV0Z50520701
Keywords : DNA * Dinucleotide conformation * Classification * Machine learning * Neural network * k-NN * Cluster analysis
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 2.672, year: 2013
Permanent Link: http://hdl.handle.net/11104/0222972File Download Size Commentary Version Access Cech_BMCBioinfo_14_205_13.pdf 13 1.1 MB Publisher’s postprint require - 6.0386045 - BFÚ 2013 RIV GB eng J - Journal Article
Morgado, C.A. - Svozil, D. - Turner, D.H. - Šponer, Jiří
Understanding the role of base stacking in nucleic acids. MD and QM analysis of tandem GA base pairs in RNA duplexes.
Physical Chemistry Chemical Physics. Roč. 14, č. 36 (2012), s. 12580-12591. ISSN 1463-9076. E-ISSN 1463-9084
R&D Projects: GA ČR(CZ) GBP305/12/G034
Institutional research plan: CEZ:AV0Z50040702
Keywords : GA base pairs * base stacking * RNA duplexes
Subject RIV: BO - Biophysics
Impact factor: 3.829, year: 2012
Permanent Link: http://hdl.handle.net/11104/0220147 - 7.0373424 - BFÚ 2012 RIV GB eng J - Journal Article
Morgado, Claudio A. - Jurečka, P. - Svozil, D. - Hobza, P. - Šponer, Jiří
Reference MP2/CBS and CCSD(T) quantum-chemical calculations on stacked adenine dimers. Comparison with DFT-D, MP2.5, SCS(MI)-MP2, M06-2X, CBS(SCS-D) and force field descriptions.
Physical Chemistry Chemical Physics. Roč. 12, č. 14 (2010), s. 3522-3534. ISSN 1463-9076. E-ISSN 1463-9084
R&D Projects: GA MŠMT(CZ) LC06030
Keywords : quantum chemistry * stacking * force field
Subject RIV: BO - Biophysics
Impact factor: 3.454, year: 2010
Permanent Link: http://hdl.handle.net/11104/0206526 - 8.0356082 - BFÚ 2011 RIV US eng J - Journal Article
Mládek, Arnošt - Šponer, Judit E. - Jurečka, P. - Banáš, P. - Otyepka, M. - Svozil, D. - Šponer, Jiří
Conformational energies of DNA sugar-phosphate backbone: Reference QM calculations and a comparison with density functional theory and molecular mechanics.
Journal of Chemical Theory and Computation. Roč. 6, č. 12 (2010), s. 3817-3835. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA AV ČR(CZ) IAA400040802; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/10/2302
Grant - others:GA ČR(CZ) GD203/09/H046; GA MŠk(CZ) LC06030; GA MŠk(CZ) LC512
Program: GD; LC; LC
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : intramolecular hydrogen-bonds * main-group thermochemistry * set superposition error
Subject RIV: BO - Biophysics
Impact factor: 5.138, year: 2010
Permanent Link: http://hdl.handle.net/11104/0194699 - 9.0345379 - BFÚ 2011 RIV GB eng J - Journal Article
Morgado, Claudio A. - Jurečka, P. - Svozil, D. - Hobza, P. - Šponer, Jiří
Reference MP2/CBS and CCSD(T) quantum-chemical calculations on stacked adenine dimers. Comparison with DFT-D, MP2.5, SCS(MI)-MP2, M06-2X, CBS(SCS-D) and force field descriptions.
Physical Chemistry Chemical Physics. Roč. 12, č. 14 (2010), s. 3522-3534. ISSN 1463-9076. E-ISSN 1463-9084
R&D Projects: GA AV ČR(CZ) IAA400040802; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) LC06030
Grant - others:GA MŠk(CZ) LC512
Program: LC
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : quantum chemistry * stacking * force field
Subject RIV: BO - Biophysics
Impact factor: 3.454, year: 2010
Permanent Link: http://hdl.handle.net/11104/0186660 - 10.0338172 - BFÚ 2010 RIV US eng J - Journal Article
Svozil, D. - Hobza, Pavel - Šponer, Jiří
Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?
[Srovnání stacking energií deseti dinukleotidových stepů v A-RNA a B-DNA duplexes. Můžeme správně určit pořadí stability pomocí kvantově chemických výpočtů?]
Journal of Physical Chemistry B. Roč. 114, č. 2 (2010), s. 1191-1203. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT(CZ) LC512; GA MŠMT(CZ) LC06030; GA AV ČR(CZ) IAA400040802
Grant - others:GA ČR(CZ) GA203/09/1476
Program: GA
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702; CEZ:AV0Z40550506
Keywords : molecular dynamics * quantum chemistry * base pair step
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0005697