Search results
- 1.0575354 - MBÚ 2024 RIV US eng J - Journal Article
Tužinčin, D. - Padrta, P. - Šanderová, Hana - Rabatinová, Alžběta - Bendová, K. - Krásný, Libor - Zídek, L. - Kadeřávek, P.
Characterization of a transitionally occupied state and thermal unfolding of domain 1.1 of s(A) factor of RNA polymerase from Bacillus subtilis.
Proteins-Structure, Function and Bioinformatics. Roč. 91, č. 9 (2023), s. 1276-1287. ISSN 0887-3585. E-ISSN 1097-0134
R&D Projects: GA MŠMT(CZ) LX22NPO5103
Institutional support: RVO:61388971
Keywords : s(A) factor * RNA polymerase * Bacillus subtilis * nmr * conformational exchange
OECD category: Microbiology
Impact factor: 2.9, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1002/prot.26531
Permanent Link: https://hdl.handle.net/11104/0345141File Download Size Commentary Version Access Characterization of a transitionally occupied state and thermal.pdf 1 1.8 MB Publisher’s postprint open-access - 2.0511008 - ÚOCHB 2020 RIV US eng J - Journal Article
Kubáň, V. - Srb, Pavel - Štégnerová, H. - Padrta, P. - Zachrdla, M. - Jeseňáková, Z. - Šanderová, Hana - Vítovská, Dragana - Krásný, Libor - Koval, Tomáš - Dohnálek, Jan - Ziemska-Legiecka, J. - Grynberg, M. - Jarnot, P. - Gruca, A. - Jensen, M. R. - Blackledge, M. - Žídek, L.
Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase.
Journal of the American Chemical Society. Roč. 141, č. 42 (2019), s. 16817-16828. ISSN 0002-7863. E-ISSN 1520-5126
R&D Projects: GA ČR(CZ) GA19-12956S; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388963 ; RVO:61388971 ; RVO:86652036
Keywords : residual dipolar couplings * Bacillus subtilis * gene expression
OECD category: Biochemistry and molecular biology; Microbiology (MBU-M); Biochemistry and molecular biology (BTO-N)
Impact factor: 14.612, year: 2019
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/jacs.9b07837
Permanent Link: http://hdl.handle.net/11104/0301354File Download Size Commentary Version Access 121_Quantitative Conformational Analysis of Functionally Important.pdf 8 1.9 MB Publisher’s postprint require - 3.0477069 - MBÚ 2018 RIV US eng J - Journal Article
Zachrdla, M. - Padrta, P. - Rabatinová, Alžběta - Šanderová, Hana - Barvík, I. - Krásný, Libor - Žídek, L.
Solution structure of domain 1.1 of the sigma(A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.
Journal of Biological Chemistry. Roč. 292, č. 28 (2017), s. 11610-11617. ISSN 0021-9258. E-ISSN 1083-351X
R&D Projects: GA ČR GA13-16842S; GA MŠMT(CZ) LQ1601
Institutional support: RVO:61388971
Keywords : Bacillus * molecular modeling * nuclear magnetic resonance (NMR)
OECD category: Microbiology
Impact factor: 4.011, year: 2017
Permanent Link: http://hdl.handle.net/11104/0273469 - 4.0471360 - BFÚ 2017 RIV US eng J - Journal Article
Kadeřávek, Pavel - Zapletal, V. - Fiala, R. - Srb, P. - Padrta, P. - Přecechtělová, J. - Šoltésová, M. - Kowalewski, J. - Widmalm, G. - Chmelík, Josef - Sklenář, V. - Žídek, L.
Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies.
Journal of Magnetic Resonance. A. Roč. 266, MAY2016 (2016), s. 23-40. ISSN 1064-1858
Institutional support: RVO:68081707 ; RVO:61388971
Keywords : molecular-orbital methods * protein backbone dynamics
Subject RIV: BO - Biophysics; EE - Microbiology, Virology (MBU-M)
Permanent Link: http://hdl.handle.net/11104/0268748 - 5.0348132 - MBÚ 2011 RIV GB eng J - Journal Article
Motáčková, V. - Šanderová, Hana - Žídek, L. - Nováček, J. - Padrta, P. - Švenková, Alžběta - Korelusová, Jana - Jonák, Jiří - Krásný, Libor - Sklenář, V.
Solution structure of the N-terminal domain of Bacillus subtilis δ subunit of RNA polymerase and its classification based on structural homologs.
Proteins-Structure, Function and Bioinformatics. Roč. 78, č. 7 (2010), s. 1807-1810. ISSN 0887-3585. E-ISSN 1097-0134
R&D Projects: GA ČR GA204/09/0583; GA MZd NR9138
Institutional research plan: CEZ:AV0Z50200510; CEZ:AV0Z50520514
Keywords : RNA polymerase * delta subunit * gram-positive bacteria
Subject RIV: EE - Microbiology, Virology
Impact factor: 2.813, year: 2010
Permanent Link: http://hdl.handle.net/11104/0188742 - 6.0340850 - MBÚ 2010 RIV NL eng J - Journal Article
Novák, P. - Žídek, L. - Motáčková, V. - Padrta, P. - Švenková, Alžběta - Nuzillard, J.-M. - Krásný, Libor - Sklenář, V.
S3EPY: a Sparky extension for determination of small scalar couplings from spin-state-selective excitation NMR experiments.
Journal of Biomolecular NMR. Roč. 46, č. 2 (2010), s. 191-197. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA ČR GA204/09/0583
Institutional research plan: CEZ:AV0Z50200510
Keywords : Software * Sparky * Residual dipolar couplings
Subject RIV: EE - Microbiology, Virology
Impact factor: 3.047, year: 2010
Permanent Link: http://hdl.handle.net/11104/0184010 - 7.0334395 - ÚOCHB 2010 RIV GB eng J - Journal Article
Macek, Pavel - Chmelík, Josef - Křížová, Ivana - Kadeřávek, P. - Padrta, P. - Žídek, L. - Wildová, Marcela - Hadravová, Romana - Chaloupková, R. - Pichová, Iva - Ruml, T. - Rumlová, Michaela - Sklenář, V.
NMR structure of the N-terminal domain of capsid protein from the Mason-Pfizer monkey virus.
Journal of Molecular Biology. Roč. 392, č. 1 (2009), s. 100-114. ISSN 0022-2836. E-ISSN 1089-8638
R&D Projects: GA MŠMT LC545; GA MŠMT 1M0508; GA ČR GA204/09/1388; GA ČR GESCO/06/E001
Grant - others:GA MŠk(CZ) 1M0520; MŠk(CZ) LC06030
Program: 1M; LC
Institutional research plan: CEZ:AV0Z40550506; CEZ:AV0Z50200510
Keywords : M-PMV * betaretroviruses * capsid protein * NMR structure * internal dynamics
Subject RIV: CE - Biochemistry
Impact factor: 3.871, year: 2009
Permanent Link: http://hdl.handle.net/11104/0179142