Search results
- 1.0576470 - ÚOCHB 2024 RIV GB eng J - Journal Article
Tempra, Carmelo - Brkljača, Z. - Vazdar, M.
Why do polyarginines adsorb at neutral phospholipid bilayers and polylysines do not? An insight from density functional theory calculations and molecular dynamics simulations.
Physical Chemistry Chemical Physics. Roč. 25, č. 40 (2023), s. 27204-27214. ISSN 1463-9076. E-ISSN 1463-9084
Institutional support: RVO:61388963
Keywords : membranes * liquid * water
OECD category: Physical chemistry
Impact factor: 3.3, year: 2022
Method of publishing: Open access
https://doi.org/10.1039/D3CP02411C
Permanent Link: https://hdl.handle.net/11104/0346031 - 2.0525109 - ÚOCHB 2021 RIV SE eng J - Journal Article
Buček, Aleš - Vazdar, M. - Tupec, Michal - Svatoš, Aleš - Pichová, Iva
Desaturase specificity is controlled by the physicochemical properties of a single amino acid residue in the substrate binding tunnel.
Computational and Structural Biotechnology Journal. Roč. 18, May (2020), s. 1202-1209. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : acyl-CoA desaturase * Manduca sexta * Bombyx mori * enzymatic specificity * protein engineering * molecular dynamics simulations
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302749?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0309320 - 3.0491315 - ÚOCHB 2019 RIV US eng J - Journal Article
Vazdar, M. - Heyda, J. - Mason, Philip E. - Tesei, G. - Allolio, C. - Lund, M. - Jungwirth, Pavel
Arginine “Magic”: Guanidinium Like-Charge Ion Pairing from Aqueous Salts to Cell Penetrating Peptides.
Accounts of Chemical Research. Roč. 51, č. 6 (2018), s. 1455-1464. ISSN 0001-4842. E-ISSN 1520-4898
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : arginine * guanidinium * molecular dynamics * X-ray scattering
OECD category: Physical chemistry
Impact factor: 21.661, year: 2018
Permanent Link: http://hdl.handle.net/11104/0285304 - 4.0490305 - ÚOCHB 2019 RIV US eng J - Journal Article
Ekholm, V. - Vazdar, M. - Mason, Philip E. - Bialik, E. - Walz, M. M. - Öhrwall, G. - Werner, J. - Rubensson, J. E. - Jungwirth, Pavel - Björneholm, O.
Anomalous surface behavior of hydrated guanidinium ions due to ion pairing.
Journal of Chemical Physics. Roč. 148, č. 14 (2018), č. článku 144508. ISSN 0021-9606. E-ISSN 1089-7690
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : guanidinium * aqueous surface * photoelectron spectroscopy * molecular dynamics
OECD category: Physical chemistry
Impact factor: 2.997, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284929 - 5.0481755 - ÚOCHB 2018 RIV US eng J - Journal Article
Tesei, G. - Vazdar, M. - Jensen, M. R. - Cragnell, C. - Mason, Philip E. - Heyda, J. - Skepö, M. - Jungwirth, Pavel - Lund, M.
Self-association of a highly charged arginine-rich cell-penetrating peptide.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 114, č. 43 (2017), s. 11428-11433. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GA16-01074S
Institutional support: RVO:61388963
Keywords : cell-penetrating peptide * self-association * MD simulations * SAXS * NMR
OECD category: Physical chemistry
Impact factor: 9.504, year: 2017
Permanent Link: http://hdl.handle.net/11104/0277440
Research data: Zenodo - 6.0475326 - ÚOCHB 2018 RIV US eng J - Journal Article
Pasquier, C. - Vazdar, M. - Forsman, J. - Jungwirth, Pavel - Lund, M.
Anomalous Protein-Protein Interactions in Multivalent Salt Solution.
Journal of Physical Chemistry B. Roč. 121, č. 14 (2017), s. 3000-3006. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR(CZ) GA16-01074S
Institutional support: RVO:61388963
Keywords : Monte Carlo * molecular dynamics * membranes * proteins * multivalent salts
OECD category: Physical chemistry
Impact factor: 3.146, year: 2017
Permanent Link: http://hdl.handle.net/11104/0272157 - 7.0475164 - ÚOCHB 2018 RIV IE eng J - Journal Article
Riedlová, Kamila - Nekardová, Michaela - Kačer, P. - Syslová, K. - Vazdar, M. - Jungwirth, Pavel - Kudová, Eva - Cwiklik, Lukasz
Distributions of therapeutically promising neurosteroids in cellular membranes.
Chemistry and Physics of Lipids. Roč. 203, Mar (2017), s. 78-86. ISSN 0009-3084. E-ISSN 1873-2941
R&D Projects: GA TA ČR(CZ) TE01020028; GA ČR(CZ) GAP303/12/1464; GA ČR GA15-14292S; GA ČR(CZ) GBP208/12/G016
Institutional support: RVO:61388963 ; RVO:61388955
Keywords : steroids * N-methyl-D-aspartate receptors * membranes * molecular dynamics * chromatography
OECD category: Physical chemistry; Physical chemistry (UFCH-W)
Impact factor: 2.766, year: 2017
Permanent Link: http://hdl.handle.net/11104/0272677 - 8.0464019 - ÚOCHB 2017 RIV US eng J - Journal Article
Robison, A. D. - Sun, S. - Poyton, M. F. - Johnson, G. A. - Pellois, J. P. - Jungwirth, Pavel - Vazdar, M. - Cremer, P. S.
Polyarginine Interacts More Strongly and Cooperatively than Polylysine with Phospholipid Bilayers.
Journal of Physical Chemistry B. Roč. 120, č. 35 (2016), s. 9287-9296. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR(CZ) GA16-01074S
Institutional support: RVO:61388963
Keywords : molecular dynamics * membranes * cell penetrating peptides
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.177, year: 2016
Permanent Link: http://hdl.handle.net/11104/0263091 - 9.0458668 - ÚOCHB 2017 RIV US eng J - Journal Article
Allolio, Christoph - Baxová, Katarína - Vazdar, M. - Jungwirth, Pavel
Guanidinium Pairing Facilitates Membrane Translocation.
Journal of Physical Chemistry B. Roč. 120, č. 1 (2016), s. 143-153. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR GA13-06181S
Institutional support: RVO:61388963
Keywords : ab initio molecular dynamics * guanidinium * like charge pairing * membrane
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.177, year: 2016
Permanent Link: http://hdl.handle.net/11104/0258911 - 10.0443291 - ÚFCH JH 2016 RIV US eng J - Journal Article
Kulig, W. - Olžyńska, Agnieszka - Jurkiewicz, Piotr - Kantola, A. M. - Komulainen, S. - Manna, M. - Pourmousa, M. - Vazdar, M. - Cwiklik, Lukasz - Rog, T. - Khelashvili, G. - Harries, D. - Telkki, V. - V. - Hof, Martin - Vattulainen, I. - Jungwirth, Pavel
Cholesterol under oxidative stress — How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols.
Free Radical Biology and Medicine. Roč. 84, JUL 2015 (2015), s. 30-41. ISSN 0891-5849. E-ISSN 1873-4596
R&D Projects: GA ČR GBP208/12/G016
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : phospholipid bilayers * oxysterols * molecular dynamics simulations
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 5.784, year: 2015
Permanent Link: http://hdl.handle.net/11104/0246022File Download Size Commentary Version Access 0443291.pdf 5 2.4 MB Publisher’s postprint require