Search results
- 1.0581040 - MBÚ 2024 RIV US eng J - Journal Article
Kopecký, J. - Kameník, Zdeněk - Omelka, M. - Novotná, J. - Stefani, Tommaso - Sagová-Marečková, M.
Phylogenetically related soil actinomycetes distinguish isolation sites by their metabolic activities.
FEMS Microbiology Ecology. Roč. 99, č. 12 (2023), č. článku fiad139. ISSN 0168-6496. E-ISSN 1574-6941
Grant - others:AV ČR(CZ) LQ200202002
Program: Prémie Lumina quaeruntur
Institutional support: RVO:61388971
Keywords : multiple sequence alignment * mass-spectrometry * spatial variation * natural-products * gene-transfer * streptomyces * diversity * bacterial * resistance * coevolution * antibiotic * metabolic differentiation * micro-niche * organic matter * phylogenetic differentiation * soil pH * Streptomyces
OECD category: Microbiology
Impact factor: 4.2, year: 2022
Method of publishing: Open access
https://academic.oup.com/femsec/article/99/12/fiad139/7342452?login=true
Permanent Link: https://hdl.handle.net/11104/0349609 - 2.0573513 - MBÚ 2024 RIV DE eng J - Journal Article
Mori, T. - Kadlčík, Stanislav - Lyu, S. - Kameník, Zdeněk - Sakurada, K. - Mazumdar, Aninda - Wang, H. - Janata, Jiří - Abe, I.
Molecular basis for carrier protein-dependent amide bond formation in the biosynthesis of lincosamide antibiotics.
NAT CATAL. Roč. 6, č. 6 (2023), s. 531-542. ISSN 2520-1158. E-ISSN 2520-1158
R&D Projects: GA MŠMT(CZ) LX22NPO5103; GA ČR(CZ) GJ20-09811Y
Grant - others:AV ČR(CZ) LQ200202002
Program: Prémie Lumina quaeruntur
Institutional support: RVO:61388971
Keywords : phytochelatin-synthase * peptide * enzyme * lincomycin * synthetase * mechanism * papain * state * celesticetin * ligases
OECD category: Microbiology
Impact factor: 37.8, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41929-023-00971-y
Permanent Link: https://hdl.handle.net/11104/0343947File Download Size Commentary Version Access Molecular basis for carrier protein-dependent amide bond formation in the biosynthesis of lincosamide antibiotics.pdf 0 6.6 MB Publisher’s postprint open-access - 3.0562368 - MBÚ 2023 RIV DE eng J - Journal Article
Vobruba, Šimon - Kadlčík, Stanislav - Janata, Jiří - Kameník, Zdeněk
TldD/TldE peptidases and N-deacetylases: A structurally unique yet ubiquitous protein family in the microbial metabolism.
Microbiological Research. Roč. 265, Dec (2022), č. článku 127186. ISSN 0944-5013. E-ISSN 1618-0623
R&D Projects: GA ČR(CZ) GJ20-09811Y; GA MŠMT(CZ) LX22NPO5103
Grant - others:AV ČR(CZ) LQ200202002
Program: Prémie Lumina quaeruntur
Institutional support: RVO:61388971
Keywords : Deacetylases * Lincosamides * Microbial specialized metabolism * Peptidases * Protein structure * Ribosomally synthesized post-translationally modified peptides * TldD/TldE
OECD category: Microbiology
Impact factor: 6.7, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0944501322002269?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0334708File Download Size Commentary Version Access TldD_TldE peptidases.pdf 4 3.7 MB Publisher’s postprint open-access - 4.0553394 - BTÚ 2023 RIV CH eng J - Journal Article
Sur, Vishma Pratap - Mazumdar, Aninda - Vimberg, Vladimír - Stefani, Tommaso - Androvič, Ladislav - Kracíková, Lucie - Laga, Richard - Kameník, Zdeněk - Komrsková, Kateřina
Specific Inhibition of VanZ-Mediated Resistance to Lipoglycopeptide Antibiotics.
International Journal of Molecular Sciences. Roč. 23, č. 1 (2022), č. článku 97. E-ISSN 1422-0067
R&D Projects: GA MZd(CZ) NU20-03-00309; GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR(CZ) GJ20-09811Y; GA ČR(CZ) GA19-08176S
Grant - others:AV ČR(CZ) LQ200202002
Program: Prémie Lumina quaeruntur
Institutional support: RVO:86652036 ; RVO:61388971 ; RVO:61389013
Keywords : ENTEROCOCCUS-FAECIUM * GENE * TEICOPLANIN * CONFERS RESISTANCE
OECD category: Biochemistry and molecular biology; Microbiology (UMCH-V)
Impact factor: 5.6, year: 2022
Method of publishing: Open access
https://www.mdpi.com/1422-0067/23/1/97
Permanent Link: http://hdl.handle.net/11104/0332267 - 5.0551070 - MBÚ 2022 RIV US eng J - Journal Article
Koběrská, Markéta - Veselá, Ludmila - Vimberg, Vladimír - Lenart, Jakub - Veselá, Jana - Kameník, Zdeněk - Janata, Jiří - Balíková Novotná, Gabriela
Beyond Self-Resistance: ABCF ATPase LmrC Is a Signal-Transducing Component of an Antibiotic-Driven Signaling Cascade Accelerating the Onset of Lincomycin Biosynthesis.
mBio. Roč. 12, č. 5 (2021), č. článku e01731-21. ISSN 2161-2129. E-ISSN 2150-7511
R&D Projects: GA ČR GJ15-16225Y; GA ČR GPP302/12/P632; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:61388971
Keywords : ABCF ATPase * Antibiotic biosynthesis * Antibiotic resistance * Antibiotic-mediated signaling * Chemical communication * Regulation of gene expression * Ribosomal regulation * Signal transduction * Specialized metabolism * Streptomyces
OECD category: Microbiology
Impact factor: 7.786, year: 2021
Method of publishing: Open access
https://journals.asm.org/doi/10.1128/mBio.01731-21
Permanent Link: http://hdl.handle.net/11104/0326412 - 6.0543828 - ÚOCHB 2022 RIV GB eng J - Journal Article
Schmid, R. - Petras, D. - Nothias, L-F. - Wang, M. - Aron, A. T. - Jagels, A. - Tsugawa, H. - Rainer, J. - Garcia-Aloy, M. - Dührkop, K. - Korf, A. - Pluskal, Tomáš - Kameník, Zdeněk - Jarmusch, A. K. - Caraballo-Rodríguez, A. M. - Weldon, K. C. - Nothias-Esposito, M. - Aksenov, A. A. - Bauermeister, A. - Albarracin Orio, A. - Grundmann, C. O. - Vargas, F. - Koester, I. - Gauglitz, J. M. - Gentry, E. C. - Hövelmann, Y. - Kalinina, S. A. - Pendergraft, M. A. - Panitchpakdi, M. - Tehan, R. - Le Gouellec, A. - Aleti, G. - Mannochio Russo, H. - Arndt, B. - Hübner, F. - Hayen, H. - Zhi, H. - Raffatellu, M. - Prather, K. A. - Aluwihare, L. I. - Böcker, S. - McPhail, K. L. - Humpf, H. U. - Karst, U. - Dorrestein, P. C.
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment.
Nature Communications. Roč. 12, č. 1 (2021), č. článku 3832. E-ISSN 2041-1723
R&D Projects: GA ČR(CZ) GM21-11563M
Grant - others:AV ČR(CZ) LQ200202002
Program: Prémie Lumina quaeruntur
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : annotation * prediction * mass spectrometry
OECD category: Biochemistry and molecular biology
Impact factor: 17.694, year: 2021
Method of publishing: Open access
https://doi.org/10.1038/s41467-021-23953-9
Permanent Link: http://hdl.handle.net/11104/0320946 - 7.0539841 - MBÚ 2021 RIV US eng J - Journal Article
Steiningerová, Lucie - Kameník, Zdeněk - Gažák, Radek - Kadlčík, Stanislav - Bashiri, G. - Man, Petr - Kuzma, Marek - Pavlíková, Magdaléna - Janata, Jiří
Different Reaction Specificities of F420H2-Dependent Reductases Facilitate Pyrrolobenzodiazepines and Lincomycin To Fit Their Biological Targets.
Journal of the American Chemical Society. Roč. 142, č. 7 (2020), s. 3440-3448. ISSN 0002-7863. E-ISSN 1520-5126
R&D Projects: GA ČR(CZ) GJ17-13436Y; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LQ1604
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971
Keywords : antibody-drug conjugate * antitumor antibiotics * sequence-analysis * gene-cluster * biosynthesis * strain * lincosamides * tuberculosis * tomaymycin
OECD category: Microbiology
Impact factor: 15.419, year: 2020
Method of publishing: Limited access
https://pubs.acs.org/doi/abs/10.1021/jacs.9b11234
Permanent Link: http://hdl.handle.net/11104/0317538 - 8.0534785 - MBÚ 2021 RIV GB eng J - Journal Article
Jarmusch, A. K. - Wang, M. - Aceves, C. M. - Kameník, Zdeněk … Total 44 authors
ReDU: a framework to find and reanalyze public mass spectrometry data.
Nature Methods. Roč. 17, č. 9 (2020), s. 901-904. ISSN 1548-7091. E-ISSN 1548-7105
Institutional support: RVO:61388971
Keywords : metabolomics * mass spectrometry * reanalysis * metadata
OECD category: Analytical chemistry
Impact factor: 28.547, year: 2020
Method of publishing: Limited access
https://www.nature.com/articles/s41592-020-0933-6#Sec29
Permanent Link: http://hdl.handle.net/11104/0312954 - 9.0534783 - MBÚ 2021 RIV GB eng J - Journal Article
Nothias, L-F. - Petras, D. - Schmid, R. - Kameník, Zdeněk … Total 62 authors
Feature-based molecular networking in the GNPS analysis environment.
Nature Methods. Roč. 17, č. 9 (2020), s. 905-908. ISSN 1548-7091. E-ISSN 1548-7105
R&D Projects: GA MŠMT(CZ) EF16_027/0007990
Institutional support: RVO:61388971
Keywords : peptidic natural-products * mass-spectrometry data * database search * lc-ms * discovery * platform
OECD category: Analytical chemistry
Impact factor: 28.547, year: 2020
Method of publishing: Limited access
https://www.nature.com/articles/s41592-020-0933-6#Sec29
Permanent Link: http://hdl.handle.net/11104/0312951 - 10.0533399 - MBÚ 2021 RIV US eng J - Journal Article
Vobruba, Šimon - Kameník, Zdeněk - Kadlčík, Stanislav - Janata, Jiří
N-Deacetylation in Lincosamide Biosynthesis Is Catalyzed by a TIdD/PmbA Family Protein.
ACS Chemical Biology. Roč. 15, č. 8 (2020), s. 2048-2054. ISSN 1554-8929. E-ISSN 1554-8937
R&D Projects: GA ČR(CZ) GJ20-09811Y; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
Grant - others:AV ČR LQ200202002
Program: Prémie Lumina quaeruntur
Institutional support: RVO:61388971
Keywords : escherichia-coli * lincomycin * specificity * cysteine
OECD category: Microbiology
Impact factor: 5.100, year: 2020
Method of publishing: Limited access
https://pubs.acs.org/doi/abs/10.1021/acschembio.0c00224
Permanent Link: http://hdl.handle.net/11104/0311784