Search results
- 1.0569062 - BC 2023 RIV CH eng J - Journal Article
Dirren-Pitsch, G. - Buhler, D. - Salcher, Michaela M. - Bassin, B. - Le Moigne, A. - Schuler, M. - Pernthaler, J. - Posch, T.
FISHing for ciliates: Catalyzed reporter deposition fluorescence in situ hybridization for the detection of planktonic freshwater ciliates.
Frontiers in Microbiology. Roč. 13, Dec (2022), č. článku 1070232. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : planktonic ciliates * card-fish * fluorescence in situ hybridization * lake water samples * quantitative protargol staining * ciliate quantification
OECD category: Microbiology
Impact factor: 5.2, year: 2022
Method of publishing: Open access
https://doi.org/10.3389/fmicb.2022.1070232
Permanent Link: https://hdl.handle.net/11104/0340362 - 2.0538633 - BC 2021 RIV GB eng J - Journal Article
Šimek, Karel - Grujčič, Vesna - Mukherjee, Indranil - Kasalický, Vojtěch - Nedoma, Jiří - Posch, T. - Mehrshad, Maliheh - Salcher, Michaela M.
Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes.
FEMS Microbiology Ecology. Roč. 96, č. 10 (2020), č. článku fiaa121. ISSN 0168-6496. E-ISSN 1574-6941
R&D Projects: GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : ciliates * bacterivorous and predatory flagellates * Cercozoa * Cryptophyceae * freshwater microbial food webs * Katablepharidacea
OECD category: Ecology
Impact factor: 4.194, year: 2020
Method of publishing: Open access
https://doi.org/10.1093/femsec/fiaa121
Permanent Link: http://hdl.handle.net/11104/0316400File Download Size Commentary Version Access SIMEK FEMS Microbiol Ecol 2020.pdf 0 3.9 MB Author´s preprint open-access - 3.0531454 - MBÚ 2021 RIV US eng J - Journal Article
Piwosz, Kasia - Shabarova, Tatiana - Pernthaler, J. - Posch, T. - Šimek, Karel - Porcal, Petr - Salcher, Michaela M.
Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations.
mSphere. Roč. 5, č. 2 (2020), č. článku e00052-20. ISSN 2379-5042. E-ISSN 2379-5042
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA19-23469S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : CARD-FISH * amplicon sequencing * bacterial communities
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 4.389, year: 2020
Method of publishing: Open access
https://msphere.asm.org/content/5/2/e00052-20
Permanent Link: http://hdl.handle.net/11104/0310116 - 4.0509653 - BC 2020 RIV US eng J - Journal Article
Šimek, Karel - Grujčič, Vesna - Nedoma, Jiří - Jezberová, Jitka - Šorf, M. - Matoušů, Anna - Pechar, L. - Posch, T. - Bruni, E.P. - Vrba, Jaroslav
Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores.
Limnology and Oceanography. Roč. 64, č. 5 (2019), s. 2295-2309. ISSN 0024-3590. E-ISSN 1939-5590
R&D Projects: GA ČR(CZ) GA17-09310S
Institutional support: RVO:60077344
Keywords : quantitative protargol stain * picoplankton * halteria * protozoa * shallow
OECD category: Microbiology
Impact factor: 3.778, year: 2019
Method of publishing: Open access
https://aslopubs.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/lno.11260
Permanent Link: http://hdl.handle.net/11104/0300497 - 5.0499264 - BC 2019 RIV GB eng J - Journal Article
Sirová, Dagmara - Barta, J. - Šimek, Karel - Posch, T. - Pech, J. - Stone, James D. - Borovec, Jakub - Adamec, Lubomír - Vrba, Jaroslav
Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant.
Microbiome. Roč. 6, DEC (2018), č. článku 225. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GAP504/11/0783; GA ČR(CZ) GA17-10493S; GA MŠMT(CZ) LM2015075; GA MŠMT(CZ) EF16_013/0001782
Institutional support: RVO:60077344 ; RVO:61389030 ; RVO:67985939
Keywords : algae * bacteria * ciliate bacterivory * digestive mutualism * fungi
OECD category: Ecology
Impact factor: 10.465, year: 2018
Permanent Link: http://hdl.handle.net/11104/0291507File Download Size Commentary Version Access 2018_Sirova_MICROBIOME_225.pdf 2 3.6 MB Other open-access - 6.0480034 - BC 2018 RIV GB eng J - Journal Article
Alfreider, A. - Baumer, A. - Bogensperger, T. - Posch, T. - Salcher, Michaela M. - Summerer, M.
CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs.
Environmental Microbiology. Roč. 19, č. 7 (2017), s. 2754-2768. ISSN 1462-2912. E-ISSN 1462-2920
Institutional support: RVO:60077344
Keywords : tricarboxylic-acid cycle * covered antarctic lake * fresh-water * genome sequence
OECD category: Microbiology
Impact factor: 4.974, year: 2017
Permanent Link: http://hdl.handle.net/11104/0275957 - 7.0479532 - BC 2018 RIV GB eng J - Journal Article
Shabarova, Tatiana - Kasalický, Vojtěch - Šimek, Karel - Nedoma, Jiří - Znachor, Petr - Posch, T. - Pernthaler, J. - Salcher, Michaela M.
Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach.
Environmental Microbiology. Roč. 19, č. 3 (2017), s. 1296-1309. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GA13-00243S; GA ČR GA15-12197S; GA ČR GA15-09721S
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * in-situ hybridization * bacterial community composition * polynucleobacter-necessarius
OECD category: Microbiology
Impact factor: 4.974, year: 2017
Permanent Link: http://hdl.handle.net/11104/0275522 - 8.0479529 - BC 2018 RIV US eng J - Journal Article
Šimek, Karel - Pitsch, G. - Salcher, Michaela M. - Sirová, Dagmara - Shabarova, Tatiana - Adamec, Lubomír - Posch, T.
Ecological traits of the algae-bearing Tetrahymena utriculariae (Ciliophora) from traps of the aquatic carnivorous plant Utricularia reflexa.
Journal of Eukaryotic Microbiology. Roč. 64, č. 3 (2017), s. 336-348. ISSN 1066-5234. E-ISSN 1550-7408
R&D Projects: GA ČR(CZ) GA13-00243S
Institutional support: RVO:60077344 ; RVO:67985939
Keywords : aquatic Utricularia * bacterial turnover rate * ciliate bacterivory and mixotrophy * microbial interactions
OECD category: Ecology; Microbiology (BU-J)
Impact factor: 2.537, year: 2017
Permanent Link: http://hdl.handle.net/11104/0275518 - 9.0474958 - BÚ 2018 RIV US eng J - Journal Article
Pitsch, G. - Adamec, Lubomír - Dirren, S. - Nitsche, F. - Šimek, Karel - Sirová, Dagmara - Posch, T.
The Green Tetrahymena utriculariae n. sp (Ciliophora, Oligohymenophorea) with Its Endosymbiotic Algae (Micractinium sp.), Living in Traps of a Carnivorous Aquatic Plant.
Journal of Eukaryotic Microbiology. Roč. 64, č. 3 (2017), s. 322-335. ISSN 1066-5234. E-ISSN 1550-7408
R&D Projects: GA ČR(CZ) GA13-00243S
Institutional support: RVO:67985939 ; RVO:60077344
Keywords : Ciliata * mixotrophy * Utricularia traps
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 2.537, year: 2017
Permanent Link: http://hdl.handle.net/11104/0271851 - 10.0459642 - BC 2017 RIV GB eng J - Journal Article
Salcher, Michaela M. - Ewert, C. - Šimek, Karel - Kasalický, Vojtěch - Posch, T.
Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains.
FEMS Microbiology Ecology. Roč. 92, č. 2 (2016), fiv156. ISSN 0168-6496. E-ISSN 1574-6941
R&D Projects: GA ČR(CZ) GA13-00243S
Institutional support: RVO:60077344
Keywords : betaproteobacteria * chemostat * co-cultivation * flagellate-selective bacterivory * interspecific competition * synergistic cooperation
Subject RIV: EE - Microbiology, Virology
Impact factor: 3.720, year: 2016
Permanent Link: http://hdl.handle.net/11104/0259818