Search results
- 1.0389524 - BFÚ 2013 RIV US eng J - Journal Article
Banáš, Pavel - Sklenovský, P. - Wedekind, J.E. - Šponer, Jiří - Otyepka, Michal
Molecular Mechanism of preQ(1) Riboswitch Action: A Molecular Dynamics Study.
Journal of Physical Chemistry B. Roč. 116, č. 42 (2012), s. 12721-12734. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR(CZ) GD203/09/H046; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/12/1878; GA ČR(CZ) GBP305/12/G034
Grant - others:GA ČR(CZ) GBP208/12/G016
Program: GB
Institutional support: RVO:68081707
Keywords : HEPATITIS-DELTA VIRUS * PARTICLE MESH EWALD * SAM-II RIBOSWITCH
Subject RIV: BO - Biophysics; BO - Biophysics (BFU-R)
Impact factor: 3.607, year: 2012
Permanent Link: http://hdl.handle.net/11104/0218381 - 2.0370399 - BFÚ 2012 RIV US eng J - Journal Article
Sklenovský, P. - Florová, P. - Banáš, P. - Réblová, Kamila - Lankaš, Filip - Otyepka, M. - Šponer, Jiří
Understanding RNA flexibility using explicit solvent simulations: The ribosomal and group I intron reverse kink-turn motifs.
Journal of Chemical Theory and Computation. Roč. 7, č. 9 (2011), s. 2963-2980. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA ČR(CZ) GD203/09/H046; GA AV ČR(CZ) IAA400040802; GA MŠMT(CZ) LC512; GA AV ČR(CZ) KJB400040901; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/11/1822; GA MŠMT(CZ) LC06030
Grant - others:GA ČR(CZ) GPP301/11/P558
Program: GP
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702; CEZ:AV0Z40550506
Keywords : reverse kink-turn * simulation * flexibility
Subject RIV: BO - Biophysics
Impact factor: 5.215, year: 2011
Permanent Link: http://hdl.handle.net/11104/0204220 - 3.0333696 - FGÚ 2010 RIV US eng J - Journal Article
Kubala, M. - Gryčová, Lenka - Lánský, Zdeněk - Sklenovský, P. - Janovská, M. - Otyepka, M. - Teisinger, Jan
Changes in Electrostatic Surface Potential of Na+/K+-ATPase Cytoplasmic Headpiece Induced by Cytoplasmic Ligand(s) Binding.
[Změny v povrchovém elektrostatickém potenciálu velké cytoplazmatické smyčky Na+/K+ ATPázy vyvolané vazbou cytoplazmatických ligandů.]
Biophysical Journal. Roč. 97, č. 6 (2009), s. 1756-1764. ISSN 0006-3495. E-ISSN 1542-0086
R&D Projects: GA ČR(CZ) GA303/07/0915
Grant - others:GA ČR(CZ) GA203/07/0564; GA ČR(CZ) GD203/09/H046
Program: GD
Institutional research plan: CEZ:AV0Z50110509
Keywords : Na(+)/K(+)-ATPase * intrinsic fluorescence * quenching
Subject RIV: BO - Biophysics
Impact factor: 4.390, year: 2009
Permanent Link: http://hdl.handle.net/11104/0178625 - 4.0327403 - FGÚ 2010 RIV NL eng J - Journal Article
Gryčová, Lenka - Sklenovský, P. - Lánský, Zdeněk - Janovská, M. - Otyepka, M. - Amler, E. - Teisinger, Jan - Kubala, M.
ATP and magnesium drive conformational changes of the Na+/K+-ATPase cytoplasmic headpiece.
[ATP a magnézium ovlivňují konformační změny cytoplazmatické smyčky Na+/K+ ATPasy.]
Biochimica Et Biophysica Acta-Biomembranes. Roč. 1788, č. 5 (2009), s. 1081-1091. ISSN 0005-2736. E-ISSN 1879-2642
R&D Projects: GA ČR(CZ) GA303/07/0915
Grant - others:GA ČR(CZ) GA203/07/0564; GA ČR(CZ) GD522/08/H003; GA MŠk(CZ) LC512
Program: GD; LC
Institutional research plan: CEZ:AV0Z50110509
Keywords : Na+/K+ ATPase * tryptophan fluorescence * conformational changes
Subject RIV: BO - Biophysics
Impact factor: 3.998, year: 2009
Permanent Link: http://hdl.handle.net/11104/0174231 - 5.0048612 - ÚOCHB 2007 RIV US eng J - Journal Article
Otyepka, M. - Sklenovský, P. - Horinek, Dominik - Kubař, Tomáš - Hobza, Pavel
How the Stabilization of INK4 Tumor Suppressor 3D Structure Evaluated by Quantum Chemical and Molecular Mechanics Calculations Corresponds Well with Experimental Results: Interplay of Association Enthalpy, Entropy, and Solvation Effects.
[Stabilizace struktury proteinu INK4 určená kvantově-chemickými výpočty molekulové mechaniky souhlasí s experimentálními výsledky: souhra asociační entalpie, entropie a solvatačních efektů.]
Journal of Physical Chemistry B. Roč. 110, č. 9 (2006), s. 4423-4429. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT LC512
Institutional research plan: CEZ:AV0Z40550506
Keywords : free energy * hydrophobic core * quantum chemistry
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 4.115, year: 2006
Permanent Link: http://hdl.handle.net/11104/0003776