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Records found: 15  
Your query: Author Sysno/Doc.kind = "^cav_un_auth 0216031 zj^"
    1.
    0511789 - BFÚ 2020 RIV GB eng J - Journal Article
    Suddala, K.C. - Price, I.R. - Dandpat, S.S. - Janeček, Michal - Kührová, P. - Šponer, Jiří - Banáš, Pavel - Ke, A. - Walter, N.G.
    Local-to-global signal transduction at the core of a Mn2+ sensing riboswitch.
    Nature Communications. Roč. 10, SEP 20 2019 (2019), č. článku 4304. E-ISSN 2041-1723
    R&D Projects: GA MŠMT EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : molecular-dynamics * eubacteria sense * rna structure * single
    OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
    Impact factor: 12.121, year: 2019
    Method of publishing: Open access
    https://www.nature.com/articles/s41467-019-12230-5.pdf
    Permanent Link: http://hdl.handle.net/11104/0302037
     
     
    2.
    0440900 - BFÚ 2015 RIV US eng J - Journal Article
    Mlýnský, V. - Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
    QM/MM Studies of Hairpin Ribozyme Self-Cleavage Suggest the Feasibility of Multiple Competing Reaction Mechanisms.
    Journal of Physical Chemistry B. Roč. 115, č. 47 (2011), s. 13911-13924. ISSN 1520-6106. E-ISSN 1520-5207
    R&D Projects: GA ČR(CZ) GAP208/10/2302; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/11/1822
    Institutional research plan: CEZ:AV0Z50040702
    Institutional support: RVO:68081707
    Keywords : TRANSITION-STATE STABILIZATION * BASE-PHOSPHATE INTERACTIONS * DENSITY-FUNCTIONAL THEORY
    Subject RIV: BO - Biophysics
    Impact factor: 3.696, year: 2011
    Permanent Link: http://hdl.handle.net/11104/0244011
     
     
    3.
    0373421 - BFÚ 2012 RIV US eng J - Journal Article
    Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
    Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.
    Journal of Physical Chemistry B. Roč. 114, č. 26 (2010), s. 8701-8712. ISSN 1520-6106. E-ISSN 1520-5207
    R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046
    Keywords : riboswitch * ribozyme * RNA structure * molecular dynamics simulations
    Subject RIV: BO - Biophysics
    Impact factor: 3.603, year: 2010
    Permanent Link: http://hdl.handle.net/11104/0006883
     
     
    4.
    0373416 - BFÚ 2012 RIV US eng J - Journal Article
    Mlýnský, V. - Banáš, P. - Hollas, D. - Réblová, Kamila - Walter, N.G. - Šponer, Jiří - Otyepka, M.
    Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.
    Journal of Physical Chemistry B. Roč. 114, č. 19 (2010), s. 6642-6652. ISSN 1520-6106. E-ISSN 1520-5207
    R&D Projects: GA MŠMT(CZ) LC06030; GA MŠMT(CZ) GD203/09/H046
    Keywords : molecular dynamics simulations * hairpin ribozyme
    Subject RIV: BO - Biophysics
    Impact factor: 3.603, year: 2010
    Permanent Link: http://hdl.handle.net/11104/0006880
     
     
    5.
    0373411 - BFÚ 2012 RIV US eng J - Journal Article
    Ditzler, M.A. - Otyepka, M. - Šponer, Jiří - Walter, N.G.
    Molecular dynamics and quantum mechanics of RNA: Conformational and chemical change we can believe in.
    Accounts of Chemical Research. Roč. 43, č. 1 (2010), s. 40-47. ISSN 0001-4842. E-ISSN 1520-4898
    R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476
    Keywords : molecular dynamics * quantum chemistry * RNA
    Subject RIV: BO - Biophysics
    Impact factor: 21.840, year: 2010
    Permanent Link: http://hdl.handle.net/11104/0206518
     
     
    6.
    0347709 - BFÚ 2011 RIV US eng J - Journal Article
    Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
    Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.
    Journal of Physical Chemistry B. Roč. 114, č. 26 (2010), s. 8701-8712. ISSN 1520-6106. E-ISSN 1520-5207
    R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046; GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) 1QS500040581
    Grant - others:GA MŠk(CZ) LC512
    Program: LC
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : riboswitch * ribozyme * RNA structure * molecular dynamics simulations
    Subject RIV: BO - Biophysics
    Impact factor: 3.603, year: 2010
    Permanent Link: http://hdl.handle.net/11104/0006029
     
     
    7.
    0345016 - BFÚ 2011 RIV US eng J - Journal Article
    Mlýnský, V. - Banáš, P. - Hollas, D. - Réblová, Kamila - Walter, N.G. - Šponer, Jiří - Otyepka, M.
    Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.
    Journal of Physical Chemistry B. Roč. 114, č. 19 (2010), s. 6642-6652. ISSN 1520-6106. E-ISSN 1520-5207
    R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046; GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) KJB400040901; GA AV ČR(CZ) 1QS500040581
    Grant - others:GA MŠk(CZ) LC512
    Program: LC
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : molecular dynamics simulations * hairpin ribozyme
    Subject RIV: BO - Biophysics
    Impact factor: 3.603, year: 2010
    Permanent Link: http://hdl.handle.net/11104/0005937
     
     
    8.
    0343781 - BFÚ 2011 RIV GB eng J - Journal Article
    Krasovská, Maryna V. - Šefčíková, J. - Špačková, Naďa - Šponer, Jiří - Walter, N.G.
    Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations.
    Journal of Molecular Biology. Roč. 351, č. 4 (2005), s. 731-748. ISSN 0022-2836. E-ISSN 1089-8638
    Grant - others:GA ČR(CZ) GA203/05/0009
    Program: GA
    Institutional research plan: CEZ:AV0Z50040507
    Keywords : HDV ribozyme * ribozyme self-cleavage * nucleic acids
    Subject RIV: BO - Biophysics
    Impact factor: 5.229, year: 2005
    Permanent Link: http://hdl.handle.net/11104/0186174
     
     
    9.
    0340136 - BFÚ 2010 RIV US eng J - Journal Article
    Ditzler, M.A. - Otyepka, M. - Šponer, Jiří - Walter, N.G.
    Molecular dynamics and quantum mechanics of RNA: Conformational and chemical change we can believe in.
    Accounts of Chemical Research. Roč. 43, č. 1 (2010), s. 40-47. ISSN 0001-4842. E-ISSN 1520-4898
    R&D Projects: GA AV ČR(CZ) IAA400040802; GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : molecular dynamics * quantum chemistry * RNA
    Subject RIV: BO - Biophysics
    Impact factor: 21.840, year: 2010
    Permanent Link: http://hdl.handle.net/11104/0183442
     
     
    10.
    0323266 - BFÚ 2009 RIV US eng J - Journal Article
    Ditzler, M.A. - Šponer, Jiří - Walter, N.G.
    Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme.
    [Molekulová dynamika ukazuje na multifunkčnost imino skupiny adeninu v katalýze kyselé báze hairpin ribozymu.]
    RNA. Roč. 15, č. 4 (2009), s. 560-575. ISSN 1355-8382. E-ISSN 1469-9001
    R&D Projects: GA AV ČR(CZ) IAA400040802
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : molecular dynamics * ribozyme * catalytic mechanism
    Subject RIV: BO - Biophysics
    Impact factor: 5.198, year: 2009
    Permanent Link: http://hdl.handle.net/11104/0171274
     
     

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