Search results
- 1.0373425 - BFÚ 2012 RIV US eng J - Journal Article
Šponer, Jiří - Šponer, Judit E. - Petrov, A.I. - Leontis, N.B.
Quantum chemical studies of nucleic acids: Can we construct a bridge to the RNA structural biology and bioinformatics communities?
Journal of Physical Chemistry B. Roč. 114, č. 48 (2010), s. 15723-15741. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT(CZ) LC06030
Keywords : quantum chemistry * RNA bioinformatics * nucleic acids
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006884 - 2.0373420 - BFÚ 2012 RIV GB eng J - Journal Article
Beššeová, Ivana - Réblová, Kamila - Leontis, N.B. - Šponer, Jiří
Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome.
Nucleic Acids Research. Roč. 38, č. 18 (2010), s. 6247-6264. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GD203/09/H046; GA MŠMT(CZ) LC06030
Keywords : RNA * molecular dynamics * three-way junction
Subject RIV: BO - Biophysics
Impact factor: 7.836, year: 2010
Permanent Link: http://hdl.handle.net/11104/0206523 - 3.0370405 - BFÚ 2012 RIV US eng J - Journal Article
Zgarbová, M. - Jurečka, P. - Banáš, P. - Otyepka, M. - Šponer, Judit E. - Leontis, N.B. - Zirbel, C.L. - Šponer, Jiří
Noncanonical hydrogen bonding in nucleic acids. Benchmark evaluation of key base-phosphate interactions in folded RNA molecules using quantum-chemical calculations and molecular dynamics simulations.
Journal of Physical Chemistry A. Roč. 115, č. 41 (2011), s. 11277-11292. ISSN 1089-5639. E-ISSN 1520-5215
R&D Projects: GA AV ČR(CZ) IAA400040802; GA ČR(CZ) GD203/09/H046; GA MŠMT(CZ) LC06030; GA ČR(CZ) GAP208/10/2302; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/11/1822
Grant - others:GA ČR(CZ) GAP208/10/1742; GA ČR(CZ) GPP301/11/P558
Program: GA; GP
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : density-functional theory * large ribosomal-subunit * gaussian-basis sets
Subject RIV: BO - Biophysics
Impact factor: 2.946, year: 2011
Permanent Link: http://hdl.handle.net/11104/0006782 - 4.0353812 - BFÚ 2011 RIV US eng J - Journal Article
Šponer, Jiří - Šponer, Judit E. - Petrov, A.I. - Leontis, N.B.
Quantum chemical studies of nucleic acids: Can we construct a bridge to the RNA structural biology and bioinformatics communities?
Journal of Physical Chemistry B. Roč. 114, č. 48 (2010), s. 15723-15741. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA AV ČR(CZ) IAA400040802; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/10/2302; GA MŠMT(CZ) LC06030
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : quantum chemistry * RNA bioinformatics * nucleic acids
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006243 - 5.0350506 - BFÚ 2011 RIV GB eng J - Journal Article
Beššeová, Ivana - Réblová, Kamila - Leontis, N.B. - Šponer, Jiří
Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome.
Nucleic Acids Research. Roč. 38, č. 18 (2010), s. 6247-6264. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) 1QS500040581; GA AV ČR(CZ) KJB400040901; GA ČR(CZ) GD203/09/H046; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) LC06030
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702; CEZ:AV0Z40550506
Keywords : RNA * molecular dynamics * three-way junction
Subject RIV: BO - Biophysics
Impact factor: 7.836, year: 2010
Permanent Link: http://hdl.handle.net/11104/0190497 - 6.0330100 - BFÚ 2010 RIV GB eng J - Journal Article
Zirbel, C.L. - Šponer, Judit E. - Šponer, Jiří - Stombaugh, J. - Leontis, N.B.
Classification and energetics of the base-phosphate interactions in RNA.
[Klasifikace a energetika báze-fosfátových interakcí v RNA.]
Nucleic Acids Research. Roč. 37, č. 15 (2009), s. 4898-4918. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA AV ČR(CZ) IAA400550701; GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) 1QS500040581; GA MŠMT(CZ) LC06030
Grant - others:GA ČR(CZ) GA203/09/1476
Program: GA
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNA * base * phosphate
Subject RIV: BO - Biophysics
Impact factor: 7.479, year: 2009
Permanent Link: http://hdl.handle.net/11104/0175964 - 7.0039009 - BFÚ 2007 RIV GB eng J - Journal Article
Mokdad, A. - Krasovska, M.V. - Šponer, Jiří - Leontis, N.B.
Structural and evolutionary classification of G/U wobble basepairs in the ribosome.
[Štrukturní a evoluční klasifikace G/U wobble párů bází v ribozómu.]
Nucleic Acids Research. Roč. 34, č. 5 (2006), s. 1326-1341. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA203/05/0388; GA ČR(CZ) GA203/05/0009
Institutional research plan: CEZ:AV0Z50040507
Keywords : G/U wobble pairs * molecular dynamics * P-interaction
Subject RIV: BO - Biophysics
Impact factor: 6.317, year: 2006
Permanent Link: http://hdl.handle.net/11104/0133193