Search results
- 1.0473351 - ÚVGZ 2017 RIV NL eng J - Journal Article
Zayats, Vasilina - Stockner, T. - Pandey, Saurabh Kumar - Woerz, K. - Ettrich, Rüdiger - Ludwig, J.
A refined atomic scale model of the Saccharomyces cerevisiae K+-translocation protein Trk1p combined with experimental evidence confirms the role of selectivity filter glycines and other key residues.
Biochimica Et Biophysica Acta-Biomembranes. Roč. 1848, č. 5 (2015), s. 1183-1195. ISSN 0005-2736. E-ISSN 1879-2642
R&D Projects: GA ČR(CZ) GA13-21053S
Institutional support: RVO:67179843
Keywords : molecular-dynamics simulations * potassium-transport * vibrio-alginolyticus * high-affinity * ion-channel * system * ktrab * prediction * symporters * currents * K+-translocation * Eukaryotic Trk * Saccharomyces cerevisiae * Homology modeling * Molecular dynamics * Selectivity filter
Subject RIV: CE - Biochemistry
Impact factor: 3.687, year: 2015
Permanent Link: http://hdl.handle.net/11104/0270493 - 2.0452784 - ÚVGZ 2016 RIV US eng J - Journal Article
Cséfalvay, Eva - Lapkouski, Mikalai - Guzanová, Alena - Cséfalvay, Ladislav - Baikova, T. - Shevelev, Igor - Bialevich, V. - Shamayeva, Katerina - Janščák, Pavel - Kutá-Smatanová, Ivana - Panjikar, S. - Carey, J. - Weiserová, Marie - Ettrich, Rüdiger
Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme.
PLoS ONE. Roč. 10, č. 6 (2015), e0128700. ISSN 1932-6203. E-ISSN 1932-6203
R&D Projects: GA ČR GAP207/12/2323; GA ČR GAP305/10/0281
Institutional support: RVO:67179843 ; RVO:61388971 ; RVO:68378050
Keywords : Escherichia-Coli * Endonuclease ecor1241 * HSDR subunit * RECBCD enzyme * proteins * genes * helicase * sequence * family * domain
Subject RIV: CE - Biochemistry
Impact factor: 3.057, year: 2015
Permanent Link: http://hdl.handle.net/11104/0253781 - 3.0444137 - ÚVGZ 2016 RIV GB eng J - Journal Article
Kulik, Natallia - Slámová, Kristýna - Ettrich, Rüdiger - Křen, V.
Computational study of β-N-acetylhexosaminidase from Talaromyces flavus, a glycosidase with high substrate flexibility.
BMC Bioinformatics. Roč. 16, JAN (2015), s. 28. ISSN 1471-2105. E-ISSN 1471-2105
R&D Projects: GA ČR(CZ) GAP207/11/0629; GA ČR GP13-06818P
Institutional support: RVO:67179843 ; RVO:61388971
Keywords : molecular docking * substrate specificity * unnatural substrates * phylogenetic analysis
Subject RIV: EE - Microbiology, Virology
Impact factor: 2.435, year: 2015
Permanent Link: http://hdl.handle.net/11104/0246710 - 4.0437252 - ÚVGZ 2015 RIV US eng J - Journal Article
Sinha, Dhiraj - Shamayeva, Katerina - Ramasubramani, V. - Řeha, David - Bialevich, V. - Khabiri, Morteza - Guzanová, Alena - Milbar, N. - Weiserová, Marie - Cséfalvay, Eva - Carey, J. - Ettrich, Rüdiger
Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I.
Journal of Molecular Modeling. Roč. 20, č. 7 (2014), s. 2334. ISSN 1610-2940. E-ISSN 0948-5023
R&D Projects: GA ČR GAP207/12/2323
Institutional support: RVO:67179843 ; RVO:61388971
Keywords : DNA restriction enzymes * Molecular modeling * QM/MM calculations * principal components analysis * E. coli * Multisubunit enzyme complex * Correlated loop motions
Subject RIV: EH - Ecology, Behaviour; EE - Microbiology, Virology (MBU-M)
Impact factor: 1.736, year: 2014
Permanent Link: http://hdl.handle.net/11104/0240850 - 5.0437116 - ÚVGZ 2015 RIV CZ eng J - Journal Article
Řeha, David - Balasubramanian, H. - Sinha, Dhiraj - Kukačka, Zdeněk - McSally, J. - Ettrichová, Olga - Novák, Petr - Carey, J. - Ettrich, Rüdiger
Molecular dynamics comparison of E. coli WrbA apoprotein and holoprotein.
Journal of Molecular Modeling. Roč. 20, č. 9 (2014), s. 2400. ISSN 1610-2940. E-ISSN 0948-5023
R&D Projects: GA ČR GAP207/10/1934
Institutional support: RVO:67179843 ; RVO:61388971
Keywords : global motions * force field parametrization * binding site volume * electrostatic potential surface * NAD(P)H:quinone oxidoreductase
Subject RIV: EH - Ecology, Behaviour
Impact factor: 1.736, year: 2014
Permanent Link: http://hdl.handle.net/11104/0240703 - 6.0435268 - ÚVGZ 2015 RIV CZ eng J - Journal Article
Pandey, Saurabh Kumar - Řeha, David - Zayats, Vasilina - Melicherčík, Milan - Carey, J. - Ettrich, Rüdiger
Binding-competent states for L-arginine in E. coli arginine repressor apoprotein.
Journal of Molecular Modeling. Roč. 20, č. 7 (2014), s. 2330. ISSN 1610-2940. E-ISSN 0948-5023
Institutional support: RVO:67179843
Keywords : allostery * ArgRC * conformational dynamics * principal components analysis * salt bridges * temporal evolution of conformers
Subject RIV: CE - Biochemistry
Impact factor: 1.736, year: 2014
Permanent Link: http://hdl.handle.net/11104/0239206 - 7.0433505 - MBÚ 2015 RIV CH eng J - Journal Article
Krejzová, Jana - Šimon, Petr - Ježová-Kalachová, Lubica - Kulik, Natallia - Bojarová, Pavla - Marhol, Petr - Pelantová, Helena - Cvačka, Josef - Ettrich, Rüdiger - Slámová, Kristýna - Křen, Vladimír
Inhibition of GlcNAc-Processing Glycosidases by C-6-Azido-NAG-Thiazoline and Its Derivatives.
Molecules. Roč. 19, č. 3 (2014), s. 3471-3488. E-ISSN 1420-3049
Institutional support: RVO:61388971 ; RVO:67179843 ; RVO:61388963
Keywords : NAG-thiazoline * enzyme inhibition * O-GlcNAcase
Subject RIV: CE - Biochemistry
Impact factor: 2.416, year: 2014
Permanent Link: http://hdl.handle.net/11104/0237745 - 8.0428345 - MBÚ 2015 RIV US eng J - Journal Article
Slámová, Kristýna - Kulik, Natallia - Fiala, Martin - Krejzová, Jana - Ettrich, Rüdiger - Křen, Vladimír
Expression, characterization and homology modeling of a novel eukaryotic GH84 beta-N-acetylglucosaminidase from Penicillium chrysogenum.
Protein Expression and Purification. Roč. 95, MAR 2014 (2014), s. 204-210. ISSN 1046-5928. E-ISSN 1096-0279
R&D Projects: GA ČR(CZ) GAP207/11/0629; GA MŠMT(CZ) 7E11011
Institutional support: RVO:61388971 ; RVO:67179843
Keywords : beta-N-acetylglucosaminidase * Homology modeling * O-GlcNAcase
Subject RIV: EE - Microbiology, Virology
Impact factor: 1.695, year: 2014
Permanent Link: http://hdl.handle.net/11104/0233700 - 9.0425304 - ÚVGZ 2014 RIV DE eng J - Journal Article
Koudeláková, T. - Chaloupková, R. - Březovský, J. - Prokop, Z. - Šebestová, E. - Hesseler, M. - Khabiri, Morteza - Plevaka, M. - Kulik, D. - Kutá-Smatanová, Ivana - Řezáčová, Pavlína - Ettrich, Rüdiger - Bornscheuer, U.T. - Damborský, J.
Engineering Enzyme Stability and Resistance to an Organic Cosolvent by Modification of Residues in the Access Tunnel.
Angewandte Chemie - International Edition. Roč. 52, č. 7 (2013), s. 1959-1963. ISSN 1433-7851. E-ISSN 1521-3773
R&D Projects: GA MŠMT(CZ) LC06010
Institutional support: RVO:67179843 ; RVO:68378050
Keywords : directed evolution * enzyme catalysis * enzymes * protein engineering * protein stability
Subject RIV: CE - Biochemistry; EB - Genetics ; Molecular Biology (UMG-J)
Impact factor: 11.336, year: 2013
Permanent Link: http://hdl.handle.net/11104/0231180File Download Size Commentary Version Access 0425304.pdf 3 1.3 MB Publisher’s postprint require - 10.0424557 - ÚVGZ 2014 RIV US eng J - Journal Article
Lapkouski, Mikalai - Panjikar, S. - Janscak, P. - Kutá-Smatanová, Ivana - Carrey, J. - Ettrich, Rüdiger - Cséfalvay, Eva
Structure of the motor subunit of type I restriction-modification complex EcoR124I.
Nature Structural & Molecular Biology. Roč. 16, č. 1 (2009), s. 94-95. ISSN 1545-9993. E-ISSN 1545-9985
R&D Projects: GA MŠMT LC06073
Institutional research plan: CEZ:AV0Z60870520
Keywords : SWI2/SNF2 ATPASE * DNA * endonuclease * protein * translocation * helicase * treckings * enzymes * core * time
Subject RIV: CE - Biochemistry
Impact factor: 12.273, year: 2009
Permanent Link: http://hdl.handle.net/11104/0230617