Search results
- 1.0585901 - ÚOCHB 2025 RIV US eng J - Journal Article
Benoni, Barbora - Potužník, Jiří František - Škríba, Anton - Benoni, Roberto - Trylčová, Jana - Tulpa, Matouš - Spustová, Kristina - Grab, K. - Mititelu, Maria Bianca - Pačes, Jan - Weber, Jan - Staněk, David - Kowalska, J. - Bednárová, Lucie - Kečkéšová, Zuzana - Vopálenský, Pavel - Gahurová, Lenka - Cahová, Hana
HIV-1 Infection Reduces NAD Capping of Host Cell snRNA and snoRNA.
ACS Chemical Biology. (2024). ISSN 1554-8929. E-ISSN 1554-8937
R&D Projects: GA MŠMT(CZ) LL1603; GA MŠMT(CZ) EH22_008/0004575
EU Projects: European Commission(XE) 101041374 - StressRNaction
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388963 ; RVO:68378050
Keywords : messenger-RNA * nicotinamide * identification
Impact factor: 4, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acschembio.4c00151
Permanent Link: https://hdl.handle.net/11104/0353546File Download Size Commentary Version Access 10.1021acschembio.4c00151.pdf 0 3 MB Publisher’s postprint open-access - 2.0583694 - ÚMG 2025 GB eng J - Journal Article
Kvapilová, K. - Misenko, P. - Radvanszky, J. - Brzon, O. - Budis, J. - Gazdarica, J. - Pos, O. - Korabecna, M. - Kašný, M. - Szemes, T. - Kvapil, P. - Pačes, Jan - Kozmik, Zbyněk
Validated WGS and WES protocols proved saliva-derived gDNA as an equivalent to blood-derived gDNA for clinical and population genomic analyses.
BMC Genomics. Roč. 25, č. 1 (2024), č. článku 187. ISSN 1471-2164. E-ISSN 1471-2164
Institutional support: RVO:68378050
Keywords : Genomics variant analysis * Saliva-derived gDNA * Whole genome sequencing * Whole exome sequencing * Validation guideline
OECD category: Biochemistry and molecular biology
Impact factor: 4.4, year: 2022
Method of publishing: Open access
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-024-10080-0
Permanent Link: https://hdl.handle.net/11104/0352871 - 3.0574713 - ÚMG 2024 RIV US eng J - Journal Article
Schlebusch, S. A. - Rídl, Jakub - Poignet, M. - Ruiz-Ruano, F. J. - Reif, J. - Pajer, P. - Pačes, Jan - Albrecht, Tomáš - Suh, A. - Reifová, R.
Rapid gene content turnover on the germline-restricted chromosome in songbirds.
Nature Communications. Roč. 14, č. 1 (2023), č. článku 4579. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LM2023055; GA ČR(CZ) GA20-23794S; GA ČR(CZ) GA23-07287S
Institutional support: RVO:68378050 ; RVO:68081766
Keywords : germline-restricted chromosome (GRC) * songbirds * genetic composition
OECD category: Biochemistry and molecular biology; Zoology (UBO-W)
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-023-40308-8
Permanent Link: https://hdl.handle.net/11104/0346859File Download Size Commentary Version Access 0574713.pdf 0 1.4 MB Publisher’s postprint open-access - 4.0571759 - ÚMG 2024 RIV CH eng J - Journal Article
Kuželová, Andrea - Dupačová, Naoko - Antošová, Barbora - Sunny, Sweetu Susan - Kozmik Jr, Zbyněk - Pačes, Jan - Skoultchi, A. - Stopka, T. - Kozmik, Zbyněk
Chromatin Remodeling Enzyme Snf2h Is Essential for Retinal Cell Proliferation and Photoreceptor Maintenance.
Cells. Roč. 12, č. 7 (2023), č. článku 1035. E-ISSN 2073-4409
R&D Projects: GA ČR GA21-27364S; GA MZd NU22-05-00374; GA MŠMT LX22NPO5102
Institutional support: RVO:68378050
Keywords : Snf2h * Smarca5 * retina * photoreceptors * cell cycle * apoptosis
OECD category: Biochemistry and molecular biology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.mdpi.com/2073-4409/12/7/1035
Permanent Link: https://hdl.handle.net/11104/0343046File Download Size Commentary Version Access cells-kuzelova-23.pdf 0 21.9 MB Publisher’s postprint open-access - 5.0559536 - ÚOCHB 2023 RIV DE eng J - Journal Article
Šimonová, Anna - Romanská, Veronika - Benoni, Barbora - Škubník, K. - Šmerdová, L. - Procházková, M. - Spustová, Kristina - Moravčík, Ondřej - Gahurová, Lenka - Pačes, Jan - Plevka, P. - Cahová, Hana
Honeybee Iflaviruses Pack Specific tRNA Fragments from Host Cells in Their Virions.
Chembiochem. Roč. 23, č. 17 (2022), č. článku e202200281. ISSN 1439-4227. E-ISSN 1439-7633
R&D Projects: GA MŠMT(CZ) LL1603; GA MŠMT(CZ) LM2018131
Institutional support: RVO:61388963 ; RVO:68378050
Keywords : human Rhinovirus type 2 * human Echovirus 18 * LC-MS
OECD category: Biochemistry and molecular biology
Impact factor: 3.2, year: 2022
Method of publishing: Open access
https://doi.org/10.1002/cbic.202200281
Permanent Link: https://hdl.handle.net/11104/0332804
Research data: ENA - 6.0555440 - ÚMG 2022 RIV US eng J - Journal Article
Žárský, V. - Klimeš, V. - Pačes, Jan - Vlček, Čestmír - Hradilová, Miluše - Benes, V. - Nývltová, E. - Hrdý, I. - Pyrih, J. - Mach, J. - Barlow, L. - Stairs, C.W. - Eme, L. - Hall, N. - Eliáš, M. - Dacks, Joel Bryan - Roger, A. - Tachezy, J.
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba.
Molecular Biology and Evolution. Roč. 38, č. 6 (2021), s. 2240-2259. ISSN 0737-4038. E-ISSN 1537-1719
R&D Projects: GA MŠMT(CZ) EF16_019/0000759; GA MŠMT(CZ) LM2018131
Research Infrastructure: ELIXIR-CZ II - 90131
Institutional support: RVO:68378050 ; RVO:60077344
Keywords : evolution of parasitism * lateral gene transfer * pathway complexity * Archamoebae * chitinous cysts * Mastigamoeba
OECD category: Biochemistry and molecular biology; Microbiology (BC-A)
Impact factor: 8.800, year: 2021
Method of publishing: Open access
https://academic.oup.com/mbe/article/38/6/2240/6126414?login=false
Permanent Link: http://hdl.handle.net/11104/0329973 - 7.0544817 - ÚMG 2022 RIV US eng J - Journal Article
Dupačová, Naoko - Antošová, Barbora - Pačes, Jan - Kozmik, Zbyněk
Meis homeobox genes control progenitor competence in the retina.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 118, č. 12 (2021), č. článku e2013136118. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GA18-20759S; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LM2018126; GA MŠMT ED2.1.00/19.0395; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:68378050
Keywords : retina * Meis * development
OECD category: Cell biology
Impact factor: 12.779, year: 2021
Method of publishing: Limited access
https://www.pnas.org/content/118/12/e2013136118
Permanent Link: http://hdl.handle.net/11104/0321624 - 8.0531934 - ÚMG 2021 RIV US eng J - Journal Article
Kočí, J. - Roslein, J. - Pačes, Jan - Kotusz, J. - Halacka, K. - Koščo, J. - Fedorčák, J. - Iakovenko, N. - Janko, K.
No evidence for accumulation of deleterious mutations and fitness degradation in clonal fish hybrids: Abandoning sex without regrets.
Molecular Ecology. Roč. 29, č. 16 (2020), s. 3038-3055. ISSN 0962-1083. E-ISSN 1365-294X
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:68378050
Keywords : asexuality * clonal decay * exome capture * fitness * Muller's ratchet * mutation load
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 6.185, year: 2020
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.15539
Permanent Link: http://hdl.handle.net/11104/0310565 - 9.0522861 - ÚMG 2020 RIV GB eng J - Journal Article
Simonova, A. - Svojanovska, B. - Trylcová, J. - Hubálek, M. - Moravčík, Ondřej - Zavrel, M. - Pavova, M. - Hodek, J. - Weber, J. - Cvacka, J. - Pačes, Jan - Cahova, H.
LC/MS analysis and deep sequencing reveal the accurate RNA composition in the HIV-1 virion.
Scientific Reports. Roč. 9, June (2019), č. článku 8697. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:68378050
Keywords : messenger-rna * noncoding rnas * 7sl rna * n-1-methyladenosine * pseudouridylation * identification * trna(lys) * protein
OECD category: Biochemistry and molecular biology
Impact factor: 3.998, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41598-019-45079-1
Permanent Link: http://hdl.handle.net/11104/0307281 - 10.0522700 - ÚMG 2020 RIV GB eng J - Journal Article
Bartoš, O. - Roslein, J. - Kotusz, J. - Pačes, Jan - Pekárik, L. - Petrtýl, M. - Halacka, K. - Kašparová, E. - Mendel, J. - Boron, A. - Juchno, D. - Leska, A. - Jablonska, O. - Benes, V. - Sidova, M. - Janko, K.
The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids.
Molecular Biology and Evolution. Roč. 36, č. 9 (2019), s. 1902-1920. ISSN 0737-4038. E-ISSN 1537-1719
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:68378050
Keywords : asexuality * polyploidy * hybridization * tissue-specific gene expression * expression-level dominance * cis-/trans-regulation
OECD category: Cell biology
Impact factor: 11.062, year: 2019
Method of publishing: Open access
https://academic.oup.com/mbe/article/36/9/1902/5488194
Permanent Link: http://hdl.handle.net/11104/0307150