Search results

  1. 1.
    0586626 - ÚEB 2025 RIV NL eng J - Journal Article
    Pavlů, Šimon - Nikumbh, S. - Kováčik, Martin - An, T. - Lenhard, B. - Šimková, Hana - Navrátilová, Pavla
    Core promoterome of barley embryo.
    Computational and Structural Biotechnology Journal. Roč. 23, DEC (2024), s. 264-277. ISSN 2001-0370. E-ISSN 2001-0370
    R&D Projects: GA ČR(CZ) GA21-18794S; GA MŠMT(CZ) EF16_019/0000827
    Research Infrastructure: e-INFRA CZ - 90140
    Institutional support: RVO:61389030
    Keywords : Cap Analysis of Gene Expression * Core promoter * Hordeum vulgare * Initiator * Morex * TOR-signaling * Transcription regulation
    OECD category: Genetics and heredity (medical genetics to be 3)
    Impact factor: 6, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1016/j.csbj.2023.12.003
    Permanent Link: https://hdl.handle.net/11104/0354071
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    2024_Pavlu_Computational and Structural Biotechnology Journal_264.pdf112.7 MBOtheropen-access
     
     
  2. 2.
    0586144 - ÚEB 2025 RIV US eng J - Journal Article
    Brabham, H. J. - Gomez De La Cruz, D. - Were, V. - Shimizu, M. - Saitoh, N. - Hernández-Pinzón, I. - Green, P.R. - Lorang, J. - Fujisaki, K. - Sato, K. - Molnár, István - Šimková, Hana - Doležel, Jaroslav - Russell, J. M. - Taylor, J. - Smoker, M. - Gupta, Y. K. - Wolpert, T. - Talbot, N. J. - Terauchi, R. - Moscou, M. J.
    Barley MLA3 recognizes the host-specificity effector Pwl2 from Magnaporthe oryzae.
    Plant Cell. Roč. 36, č. 2 (2024), s. 447-470. ISSN 1040-4651. E-ISSN 1532-298X
    R&D Projects: GA MŠMT(CZ) EF16_019/0000827
    Institutional support: RVO:61389030
    Keywords : powdery-mildew-resistance * leucine-rich repeat * nbs-lrr gene * f-sp hordei * disease-resistance * blast fungus * conferring resistance * convergent evolution * pathogen effector * arabidopsis
    OECD category: Biochemistry and molecular biology
    Impact factor: 12.0, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1093/plcell/koad266
    Permanent Link: https://hdl.handle.net/11104/0353729
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    2024_Brabham_PLANT CELL_447.pdf157.2 MBOtheropen-access
     
     
  3. 3.
    0572698 - ÚEB 2024 RIV DE eng J - Journal Article
    Boden, S. A. - McIntosh, R.A. - Uauy, C. - Krattinger, S.G. - Dubcovsky, J. - Rogers, W. J. - Xia, X. C. - Badaeva, E.D. - Bentley, A. R. - Brown-Guedira, G. - Caccamo, M. - Cattivelli, L. - Chhuneja, P. - Cockram, J. - Contreras-Moreira, B. - Dreisigacker, S. - Edwards, D. - González, F. G. - Guzmán, C. - Ikeda, T. M. - Karsai, I. - Nasuda, S. - Pozniak, C. - Prins, R. - Sen, T. Z. - Silva, P. J. - Šimková, Hana - Zhang, Y.
    Updated guidelines for gene nomenclature in wheat.
    Theoretical and Applied Genetics. Roč. 136, č. 4 (2023), č. článku 72. ISSN 0040-5752. E-ISSN 1432-2242
    R&D Projects: GA MŠMT(CZ) EF16_019/0000827
    Institutional support: RVO:61389030
    Keywords : Abiotic stress tolerances * Gene annotation * Genetic information
    OECD category: Genetics and heredity (medical genetics to be 3)
    Impact factor: 5.4, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1007/s00122-023-04253-w
    Permanent Link: https://hdl.handle.net/11104/0343305
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    2023_Boden_Theoretical and Applied Genetics_72.pdf31.2 MBOtheropen-access
     
     
  4. 4.
    0572694 - ÚEB 2024 RIV US eng J - Journal Article
    Kubalová, I. - Câmara, A. S. - Cápal, Petr - Beseda, Tomáš - Rouillard, J.-M. - Krause, G. M. - Holušová, Kateřina - Toegelová, Helena - Himmelbach, A. - Stein, N. - Houben, A. - Doležel, Jaroslav - Mascher, M. - Šimková, Hana - Schubert, V.
    Helical coiling of metaphase chromatids.
    Nucleic Acids Research. Roč. 51, č. 6 (2023), s. 2641-2654. ISSN 0305-1048. E-ISSN 1362-4962
    R&D Projects: GA ČR(CZ) GC18-14450J; GA MŠMT(CZ) EF16_019/0000827
    Institutional support: RVO:61389030
    Keywords : MITOTIC CHROMOSOME STRUCTURE * SPIRAL STRUCTURE * TRADESCANTIA-REFLEXA
    OECD category: Plant sciences, botany
    Impact factor: 14.9, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1093/nar/gkad028
    Permanent Link: https://hdl.handle.net/11104/0343302
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    2023_Kubalova_NUCLEIC ACIDS RESEARCH_2641_____@@@.pdf212.3 MBOtheropen-access
     
     
  5. 5.
    0568618 - BC 2023 RIV US eng J - Journal Article
    Hofstatter, P. G. - Thangavel, G. - Lux, T. - Neumann, Pavel - Vondrak, Tihana - Novák, Petr - Zhang, M. - Costa, L. - Castellani, M. - Scott, A. - Toegelová, Helena - Fuchs, J. - Mata-Sucre, Y. - Dias, Y. - Vanzela, A.L.L. - Huettel, B. - Almeida, C. C. S. - Šimková, Hana - Souza, G. - Pedrosa-Harand, A. - Macas, Jiří - Mayer, K. F. X. - Houben, A. - Marques, A.
    Repeat-based holocentromeres influence genome architecture and karyotype evolution.
    Cell. Roč. 185, č. 17 (2022), s. 3153-3168. ISSN 0092-8674. E-ISSN 1097-4172
    R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
    Institutional support: RVO:60077344 ; RVO:61389030
    Keywords : spatial genome organization * holocentric chromosomes * genome regulation * centromere * Rhynchospora * transposable elements * whole-genome duplication
    OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (UEB-Q)
    Impact factor: 64.5, year: 2022
    Method of publishing: Open access
    https://www.sciencedirect.com/science/article/pii/S0092867422007978?via%3Dihub#kwrds0010
    Permanent Link: https://hdl.handle.net/11104/0339891
     
     
  6. 6.
    0562062 - ÚEB 2023 RIV US eng J - Journal Article
    Holden, S. - Bergum, M. - Green, P.R. - Bettgenhaeuser, J. - Hernández-Pinzón, I. - Thind, A. - Clare, S. - Russell, J. M. - Hubbard, A. - Taylor, J. - Smoker, M. - Gardiner, M. - Civolani, L. - Cosenza, F. - Rosignoli, S. - Strugala, R. - Molnár, István - Šimková, Hana - Doležel, Jaroslav - Schaffrath, U. - Barrett, M. - Salvi, S. - Moscou, M. J.
    A lineage-specific Exo70 is required for receptor kinase-mediated immunity in barley.
    Science Advances. Roč. 8, č. 27 (2022), č. článku eabn7258. ISSN 2375-2548. E-ISSN 2375-2548
    R&D Projects: GA MŠMT(CZ) EF16_019/0000827
    Institutional support: RVO:61389030
    Keywords : LEUCINE-RICH REPEAT * DISEASE RESISTANCE * EXOCYST
    OECD category: Biochemistry and molecular biology
    Impact factor: 13.6, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1126/sciadv.abn7258
    Permanent Link: https://hdl.handle.net/11104/0334478
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    2022_Holden_SCIENCE ADVANCES_eabn7258.pdf12 MBOtheropen-access
     
     
  7. 7.
    0561822 - ÚEB 2023 RIV US eng J - Journal Article
    Navrátilová, Pavla - Toegelová, Helena - Tulpová, Zuzana - Kuo, Y. T. - Stein, N. - Doležel, Jaroslav - Houben, A. - Šimková, Hana - Mascher, M.
    Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.
    Plant Biotechnology Journal. Roč. 20, č. 7 (2022), s. 1373-1386. ISSN 1467-7644. E-ISSN 1467-7652
    R&D Projects: GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131; GA ČR(CZ) GA17-17564S; GA ČR(CZ) GC18-14450J
    Institutional support: RVO:61389030
    Keywords : CenH3 * Cereba * ChIP-seq * flow cytometry * nanopore * PacBio HiFi reads * ribosomal DNA * satellite * telomeric repeats
    OECD category: Genetics and heredity (medical genetics to be 3)
    Impact factor: 13.8, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1111/pbi.13816
    Permanent Link: https://hdl.handle.net/11104/0334316
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    2022_Navratilova_Plant Biotechnology Journal_1373.pdf13.9 MBOtheropen-access
     
     
  8. 8.
    0558708 - ÚEB 2023 RIV US eng J - Journal Article
    Tulpová, Zuzana - Kovařík, Aleš - Toegelová, Helena - Navrátilová, Pavla - Kapustová, Veronika - Hřibová, Eva - Vrána, Jan - Macas, Jiří - Doležel, Jaroslav - Šimková, Hana
    Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach.
    Plant Genome. Roč. 15, č. 1 (2022), č. článku e20191. E-ISSN 1940-3372
    R&D Projects: GA ČR(CZ) GA17-17564S; GA ČR(CZ) GA19-03442S; GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131
    Institutional support: RVO:61389030 ; RVO:68081707 ; RVO:60077344
    Keywords : RNA GENES * CYTOSINE METHYLATION * GENOME
    OECD category: Biochemistry and molecular biology; Genetics and heredity (medical genetics to be 3) (BC-A)
    Impact factor: 4.2, year: 2022
    Method of publishing: Open access
    http://doi.org/10.1002/tpg2.20191
    Permanent Link: http://hdl.handle.net/11104/0332273
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    2022_Tulpova_PLANT GENOME_e20191.pdf11.9 MBOtheropen-access
     
     
  9. 9.
    0549408 - ÚEB 2022 RIV US eng J - Journal Article
    Mascher, M. - Wicker, T. - Jenkins, J. - Plott, C. - Lux, T. - Koh, C. S. - Ens, J. - Gundlach, H. - Boston, L. B. - Tulpová, Zuzana - Holden, S. - Hernández-Pinzón, I. - Scholz, U. - Mayer, K. F. X. - Spannagl, M. - Pozniak, C. - Sharpe, A. J. - Šimková, Hana - Moscou, M. J. - Grimwood, J. - Schmutz, J. - Stein, N.
    Long-read sequence assembly: A technical evaluation in barley.
    Plant Cell. Roč. 33, č. 6 (2021), s. 1888-1906. ISSN 1040-4651. E-ISSN 1532-298X
    R&D Projects: GA ČR(CZ) GA17-17564S; GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2015047
    Institutional support: RVO:61389030
    Keywords : DISEASE RESISTANCE * GENOME * ALIGNMENT
    OECD category: Biochemistry and molecular biology
    Impact factor: 12.085, year: 2021
    Method of publishing: Open access
    http://doi.org/10.1093/plcell/koab077
    Permanent Link: http://hdl.handle.net/11104/0325425
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    2021_Mascher_PLANT CELL_1888.pdf13.7 MBOtheropen-access
     
     
  10. 10.
    0548808 - ÚEB 2022 RIV US eng J - Journal Article
    Blavet, Nicolas - Yang, H. - Su, H. Y. - Solanský, Pavel - Douglas, R. N. - Karafiátová, Miroslava - Šimková, Lucie - Zhang, J. - Liu, Y. - Hou, J. - Shi, X. - Chen, C. - El-Walid, M. - McCaw, M. E. - Albert, P. S. - Gao, Z. - Zhao, C. - Ben-Zvi, G. - Glick, L. - Kol, G. - Shi, J. - Vrána, Jan - Šimková, Hana - Lamb, J. H. - Newton, K. - Dawe, R. K. - Doležel, Jaroslav - Ji, T. - Baruch, K. - Cheng, J. - Han, F. Z. - Birchler, J. A. - Bartoš, Jan
    Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution.
    Proceedings of the National Academy of Sciences of the United States of America. Roč. 118, č. 23 (2021), č. článku e2104254118. ISSN 0027-8424. E-ISSN 1091-6490
    R&D Projects: GA ČR(CZ) GJ18-12338Y; GA MŠMT(CZ) EF16_019/0000827
    Institutional support: RVO:61389030
    Keywords : B chromosome * Genetic drive * Nondisjunction * Preferential fertilization
    OECD category: Cell biology
    Impact factor: 12.779, year: 2021
    Method of publishing: Open access
    http://doi.org/10.1073/PNAS.2104254118
    Permanent Link: http://hdl.handle.net/11104/0324856
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    2021_Blavet_PNAS_e2104254118.pdf11.9 MBOtheropen-access
     
     

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