Search results
- 1.0586626 - ÚEB 2025 RIV NL eng J - Journal Article
Pavlů, Šimon - Nikumbh, S. - Kováčik, Martin - An, T. - Lenhard, B. - Šimková, Hana - Navrátilová, Pavla
Core promoterome of barley embryo.
Computational and Structural Biotechnology Journal. Roč. 23, DEC (2024), s. 264-277. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA21-18794S; GA MŠMT(CZ) EF16_019/0000827
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61389030
Keywords : Cap Analysis of Gene Expression * Core promoter * Hordeum vulgare * Initiator * Morex * TOR-signaling * Transcription regulation
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 6, year: 2022
Method of publishing: Open access
https://doi.org/10.1016/j.csbj.2023.12.003
Permanent Link: https://hdl.handle.net/11104/0354071File Download Size Commentary Version Access 2024_Pavlu_Computational and Structural Biotechnology Journal_264.pdf 1 12.7 MB Other open-access - 2.0586144 - ÚEB 2025 RIV US eng J - Journal Article
Brabham, H. J. - Gomez De La Cruz, D. - Were, V. - Shimizu, M. - Saitoh, N. - Hernández-Pinzón, I. - Green, P.R. - Lorang, J. - Fujisaki, K. - Sato, K. - Molnár, István - Šimková, Hana - Doležel, Jaroslav - Russell, J. M. - Taylor, J. - Smoker, M. - Gupta, Y. K. - Wolpert, T. - Talbot, N. J. - Terauchi, R. - Moscou, M. J.
Barley MLA3 recognizes the host-specificity effector Pwl2 from Magnaporthe oryzae.
Plant Cell. Roč. 36, č. 2 (2024), s. 447-470. ISSN 1040-4651. E-ISSN 1532-298X
R&D Projects: GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:61389030
Keywords : powdery-mildew-resistance * leucine-rich repeat * nbs-lrr gene * f-sp hordei * disease-resistance * blast fungus * conferring resistance * convergent evolution * pathogen effector * arabidopsis
OECD category: Biochemistry and molecular biology
Impact factor: 12.0, year: 2022
Method of publishing: Open access
https://doi.org/10.1093/plcell/koad266
Permanent Link: https://hdl.handle.net/11104/0353729File Download Size Commentary Version Access 2024_Brabham_PLANT CELL_447.pdf 1 57.2 MB Other open-access - 3.0572698 - ÚEB 2024 RIV DE eng J - Journal Article
Boden, S. A. - McIntosh, R.A. - Uauy, C. - Krattinger, S.G. - Dubcovsky, J. - Rogers, W. J. - Xia, X. C. - Badaeva, E.D. - Bentley, A. R. - Brown-Guedira, G. - Caccamo, M. - Cattivelli, L. - Chhuneja, P. - Cockram, J. - Contreras-Moreira, B. - Dreisigacker, S. - Edwards, D. - González, F. G. - Guzmán, C. - Ikeda, T. M. - Karsai, I. - Nasuda, S. - Pozniak, C. - Prins, R. - Sen, T. Z. - Silva, P. J. - Šimková, Hana - Zhang, Y.
Updated guidelines for gene nomenclature in wheat.
Theoretical and Applied Genetics. Roč. 136, č. 4 (2023), č. článku 72. ISSN 0040-5752. E-ISSN 1432-2242
R&D Projects: GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:61389030
Keywords : Abiotic stress tolerances * Gene annotation * Genetic information
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 5.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1007/s00122-023-04253-w
Permanent Link: https://hdl.handle.net/11104/0343305File Download Size Commentary Version Access 2023_Boden_Theoretical and Applied Genetics_72.pdf 3 1.2 MB Other open-access - 4.0572694 - ÚEB 2024 RIV US eng J - Journal Article
Kubalová, I. - Câmara, A. S. - Cápal, Petr - Beseda, Tomáš - Rouillard, J.-M. - Krause, G. M. - Holušová, Kateřina - Toegelová, Helena - Himmelbach, A. - Stein, N. - Houben, A. - Doležel, Jaroslav - Mascher, M. - Šimková, Hana - Schubert, V.
Helical coiling of metaphase chromatids.
Nucleic Acids Research. Roč. 51, č. 6 (2023), s. 2641-2654. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GC18-14450J; GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:61389030
Keywords : MITOTIC CHROMOSOME STRUCTURE * SPIRAL STRUCTURE * TRADESCANTIA-REFLEXA
OECD category: Plant sciences, botany
Impact factor: 14.9, year: 2022
Method of publishing: Open access
https://doi.org/10.1093/nar/gkad028
Permanent Link: https://hdl.handle.net/11104/0343302File Download Size Commentary Version Access 2023_Kubalova_NUCLEIC ACIDS RESEARCH_2641_____@@@.pdf 2 12.3 MB Other open-access - 5.0568618 - BC 2023 RIV US eng J - Journal Article
Hofstatter, P. G. - Thangavel, G. - Lux, T. - Neumann, Pavel - Vondrak, Tihana - Novák, Petr - Zhang, M. - Costa, L. - Castellani, M. - Scott, A. - Toegelová, Helena - Fuchs, J. - Mata-Sucre, Y. - Dias, Y. - Vanzela, A.L.L. - Huettel, B. - Almeida, C. C. S. - Šimková, Hana - Souza, G. - Pedrosa-Harand, A. - Macas, Jiří - Mayer, K. F. X. - Houben, A. - Marques, A.
Repeat-based holocentromeres influence genome architecture and karyotype evolution.
Cell. Roč. 185, č. 17 (2022), s. 3153-3168. ISSN 0092-8674. E-ISSN 1097-4172
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344 ; RVO:61389030
Keywords : spatial genome organization * holocentric chromosomes * genome regulation * centromere * Rhynchospora * transposable elements * whole-genome duplication
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (UEB-Q)
Impact factor: 64.5, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0092867422007978?via%3Dihub#kwrds0010
Permanent Link: https://hdl.handle.net/11104/0339891 - 6.0562062 - ÚEB 2023 RIV US eng J - Journal Article
Holden, S. - Bergum, M. - Green, P.R. - Bettgenhaeuser, J. - Hernández-Pinzón, I. - Thind, A. - Clare, S. - Russell, J. M. - Hubbard, A. - Taylor, J. - Smoker, M. - Gardiner, M. - Civolani, L. - Cosenza, F. - Rosignoli, S. - Strugala, R. - Molnár, István - Šimková, Hana - Doležel, Jaroslav - Schaffrath, U. - Barrett, M. - Salvi, S. - Moscou, M. J.
A lineage-specific Exo70 is required for receptor kinase-mediated immunity in barley.
Science Advances. Roč. 8, č. 27 (2022), č. článku eabn7258. ISSN 2375-2548. E-ISSN 2375-2548
R&D Projects: GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:61389030
Keywords : LEUCINE-RICH REPEAT * DISEASE RESISTANCE * EXOCYST
OECD category: Biochemistry and molecular biology
Impact factor: 13.6, year: 2022
Method of publishing: Open access
https://doi.org/10.1126/sciadv.abn7258
Permanent Link: https://hdl.handle.net/11104/0334478File Download Size Commentary Version Access 2022_Holden_SCIENCE ADVANCES_eabn7258.pdf 1 2 MB Other open-access - 7.0561822 - ÚEB 2023 RIV US eng J - Journal Article
Navrátilová, Pavla - Toegelová, Helena - Tulpová, Zuzana - Kuo, Y. T. - Stein, N. - Doležel, Jaroslav - Houben, A. - Šimková, Hana - Mascher, M.
Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.
Plant Biotechnology Journal. Roč. 20, č. 7 (2022), s. 1373-1386. ISSN 1467-7644. E-ISSN 1467-7652
R&D Projects: GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131; GA ČR(CZ) GA17-17564S; GA ČR(CZ) GC18-14450J
Institutional support: RVO:61389030
Keywords : CenH3 * Cereba * ChIP-seq * flow cytometry * nanopore * PacBio HiFi reads * ribosomal DNA * satellite * telomeric repeats
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 13.8, year: 2022
Method of publishing: Open access
https://doi.org/10.1111/pbi.13816
Permanent Link: https://hdl.handle.net/11104/0334316File Download Size Commentary Version Access 2022_Navratilova_Plant Biotechnology Journal_1373.pdf 1 3.9 MB Other open-access - 8.0558708 - ÚEB 2023 RIV US eng J - Journal Article
Tulpová, Zuzana - Kovařík, Aleš - Toegelová, Helena - Navrátilová, Pavla - Kapustová, Veronika - Hřibová, Eva - Vrána, Jan - Macas, Jiří - Doležel, Jaroslav - Šimková, Hana
Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach.
Plant Genome. Roč. 15, č. 1 (2022), č. článku e20191. E-ISSN 1940-3372
R&D Projects: GA ČR(CZ) GA17-17564S; GA ČR(CZ) GA19-03442S; GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131
Institutional support: RVO:61389030 ; RVO:68081707 ; RVO:60077344
Keywords : RNA GENES * CYTOSINE METHYLATION * GENOME
OECD category: Biochemistry and molecular biology; Genetics and heredity (medical genetics to be 3) (BC-A)
Impact factor: 4.2, year: 2022
Method of publishing: Open access
http://doi.org/10.1002/tpg2.20191
Permanent Link: http://hdl.handle.net/11104/0332273File Download Size Commentary Version Access 2022_Tulpova_PLANT GENOME_e20191.pdf 1 1.9 MB Other open-access - 9.0549408 - ÚEB 2022 RIV US eng J - Journal Article
Mascher, M. - Wicker, T. - Jenkins, J. - Plott, C. - Lux, T. - Koh, C. S. - Ens, J. - Gundlach, H. - Boston, L. B. - Tulpová, Zuzana - Holden, S. - Hernández-Pinzón, I. - Scholz, U. - Mayer, K. F. X. - Spannagl, M. - Pozniak, C. - Sharpe, A. J. - Šimková, Hana - Moscou, M. J. - Grimwood, J. - Schmutz, J. - Stein, N.
Long-read sequence assembly: A technical evaluation in barley.
Plant Cell. Roč. 33, č. 6 (2021), s. 1888-1906. ISSN 1040-4651. E-ISSN 1532-298X
R&D Projects: GA ČR(CZ) GA17-17564S; GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2015047
Institutional support: RVO:61389030
Keywords : DISEASE RESISTANCE * GENOME * ALIGNMENT
OECD category: Biochemistry and molecular biology
Impact factor: 12.085, year: 2021
Method of publishing: Open access
http://doi.org/10.1093/plcell/koab077
Permanent Link: http://hdl.handle.net/11104/0325425File Download Size Commentary Version Access 2021_Mascher_PLANT CELL_1888.pdf 1 3.7 MB Other open-access - 10.0548808 - ÚEB 2022 RIV US eng J - Journal Article
Blavet, Nicolas - Yang, H. - Su, H. Y. - Solanský, Pavel - Douglas, R. N. - Karafiátová, Miroslava - Šimková, Lucie - Zhang, J. - Liu, Y. - Hou, J. - Shi, X. - Chen, C. - El-Walid, M. - McCaw, M. E. - Albert, P. S. - Gao, Z. - Zhao, C. - Ben-Zvi, G. - Glick, L. - Kol, G. - Shi, J. - Vrána, Jan - Šimková, Hana - Lamb, J. H. - Newton, K. - Dawe, R. K. - Doležel, Jaroslav - Ji, T. - Baruch, K. - Cheng, J. - Han, F. Z. - Birchler, J. A. - Bartoš, Jan
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 118, č. 23 (2021), č. článku e2104254118. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GJ18-12338Y; GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:61389030
Keywords : B chromosome * Genetic drive * Nondisjunction * Preferential fertilization
OECD category: Cell biology
Impact factor: 12.779, year: 2021
Method of publishing: Open access
http://doi.org/10.1073/PNAS.2104254118
Permanent Link: http://hdl.handle.net/11104/0324856File Download Size Commentary Version Access 2021_Blavet_PNAS_e2104254118.pdf 1 1.9 MB Other open-access