Search results
- 1.0457080 - ÚOCHB 2016 CZ eng A - Abstract
Zgarbová, M. - Otyepka, M. - Šponer, Jiří - Lankaš, Filip - Jurečka, P.
Base pair fraying in molecular dynamics simulations of nucleic acids as a force field benchmark.
Modeling Interactions in Biomolecules 7th. Praha: MATFYZPRESS, 2015 - (Burda, J.). s. 86. ISBN 978-80-7378-303-7.
[Modeling Interactions in Biomolecules /7./. 14.09.2015-18.09.2015, Praha]
Institutional support: RVO:61388963 ; RVO:68081707
Keywords : nucleic acids * molecular dynamics simulations
Subject RIV: CF - Physical ; Theoretical Chemistry
Permanent Link: http://hdl.handle.net/11104/0257519 - 2.0435302 - ÚFCH JH 2015 IT eng A - Abstract
Civiš, Svatopluk - Ferus, Martin - Šponer, Judit E. - Šponer, Jiří
High-energy chemistry of formamide: spectroscopy of LIGB plasma and a unified mechanism of nuvleic base formation.
Bologna2014. The 23rd International Conference on High Resolution Molecular Spectroscopy. Book of Abstracts. Bologna: University of Bologna, 2014. s. 279-279.
[Bologna2014. International Conference on High Resolution Molecular Spectroscopy /23./. 02.09.2014-06.09.2014, Bologna]
R&D Projects: GA ČR(CZ) GA14-12010S
Institutional support: RVO:61388955 ; RVO:68081707
Keywords : spectroscopy * high-energy simulations
Subject RIV: CF - Physical ; Theoretical Chemistry
Permanent Link: http://hdl.handle.net/11104/0239172 - 3.0425111 - ÚFCH JH 2014 US eng A - Abstract
Šponer, Judit E. - Mládek, Arnošt - Ferus, Martin - Civiš, Svatopluk - Šponer, Jiří
Quantum chemical studies on the formamide-based origin of life.
Journal of Biomolecular Structure & Dynamics. Taylor & Francis. Roč. 31, SI (2013), s. 11-12. ISSN 0739-1102
Institutional support: RVO:61388955 ; RVO:68081707
Keywords : nucleobases
Subject RIV: CF - Physical ; Theoretical Chemistry
Permanent Link: http://hdl.handle.net/11104/0231077 - 4.0364223 - ÚOCHB 2012 CZ eng A - Abstract
Beššeová, Ivana - Réblová, Kamila - Leontis, N. B. - Šponer, Jiří
Intrinsically flexible ribosomal RNA segments. Family C3-way junctions and their possible role in the translation.
3rd Quantum Bioinorganic Chemistry Conference. Praha: -, 2011. s. 50-51.
[Quantum Bioinorganic Chemistry Conference /3./. 25.06.2011-28.06.2011, Český Krumlov]
Institutional research plan: CEZ:AV0Z40550506
Keywords : ribosomal RNA segments
Subject RIV: CF - Physical ; Theoretical Chemistry
Permanent Link: http://hdl.handle.net/11104/0199758 - 5.0334476 - BFÚ 2010 ES eng A - Abstract
Šponer, Jiří
RNA based molecular machines and enzymes. Theory and experiment.
[RNA molekulární stroje a enzymy. Teorie a experiment.]
Program & Abstracts. Barcelona, 2009. s. 13-14.
[Expanding the frontiers of molecular dynamics simulations in biology. BSC-IRB Joint Conference. 23.11.2009-25.11.2009, Barcelona]
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNA * molecular dynamics * simulations
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0179195 - 6.0332814 - BFÚ 2010 AT eng A - Abstract
Špačková, Naďa - Šponer, Jiří
Computer simulations on guanine quadruplexes - focused on loops.
[Počítačové simulace guaninových kvadruplexů - zaměřeno na smyčky.]
Abstracts. Ötz Valley, 2009. IL-04.
[Self-Assembly of Guanosine Derivatives: From Biological Systems to Nanotechnological Applications. 20.06.2009-25.06.2009, Ötz Valley]
R&D Projects: GA MŠMT(CZ) LC06030
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : molecular dynamics * guanine quadruplex * quadruplex loop
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0177950 - 7.0332811 - BFÚ 2010 ES eng A - Abstract
Réblová, Kamila - Rázga, F. - Li, F. - Gao, W. - Frank, J. - Šponer, Jiří
Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM.
[Dynamika základu ribosomálního A-site fingru odkrytá pomocí molekulově dynamických simulací a Cryo-EM.]
Program & Abstracts. Barcelona, 2009. s. 15.
[Expanding the frontiers of molecular dynamics simulations in biology. BSC-IRB Joint Conference. 23.11.2009-25.11.2009, Barcelona]
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNA * molecular dynamics * simulations
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0177947 - 8.0332770 - BFÚ 2010 ES eng A - Abstract
Beššeová, Ivana - Réblová, Kamila - Leontis, N.B. - Šponer, Jiří
Three-way junctions can act as flexible RNA structural elements in large RNA molecules: A molecular simulation analysis.
[Trojcestná rozhraní RNA mohou fungovat jako flexibilní strukturní elementy RNA ve velkých molekulách RNA: Analýza molekulové simulace.]
Program & Abstracts. Barcelona, 2009. s. 48.
[Expanding the frontiers of molecular dynamics simulations in biology. BSC-IRB Joint Conference. 23.11.2009-25.11.2009, Barcelona]
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNA * molecular dynamics * simulations
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0177914 - 9.0332000 - BFÚ 2010 CZ eng A - Abstract
Šponer, Jiří
Structure, dynamics, function of evolution of non-coding RNAs. Computational methods as useful complements of experiments.
[Struktura, dynamika, funkce a evoluce nekódujících RNA. Počítačové metody jako užitečný doplněk experimentů.]
Lecture. Brno, 2009. s. 4. ISSN 1214-8598.
[RNA Club, 7. ročník. 30.10.2009-30.10.2009, Brno]
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNAs * computational methods * quantum chemistry
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0177366 - 10.0329967 - ÚOCHB 2010 FR eng A - Abstract
Vokáčová, Zuzana - Bickelhaupt, F. M. - Šponer, Jiří - Sychrovský, Vladimír
Structural interpretation of J-coupling constants calculated in guanosine and deoxy-guanosine.
[Strukturní interpretace J-kaplingů vypočtených v guanosinu a deoxy-guanosinu.]
13th International Conference on the Applications of Density Functional Theory in Chemistry and Physics. Lyon: -, 2009. s. 101-101.
[International Conference on the Application of Density Functional Theory in Chemistry and Physics /13./. 31.08.2009-04.09.2009, Lyon]
Institutional research plan: CEZ:AV0Z40550506
Keywords : guanosine * J-coupling * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Permanent Link: http://hdl.handle.net/11104/0175856