Search results
- 1.0571529 - BFÚ 2024 RIV GB eng J - Journal Article
Jedlička, Pavel - Tokan, Viktor - Kejnovská, Iva - Hobza, Roman - Kejnovský, Eduard
Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species.
Mobile DNA. Roč. 14, č. 1 (2023), č. článku 3. ISSN 1759-8753. E-ISSN 1759-8753
R&D Projects: GA ČR(CZ) GA21-00580S
Institutional support: RVO:68081707
Keywords : Telomere * G-quadruplex * Retrotransposon * Drosophila * Het-A * tart * tahre
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 4.9, year: 2022
Method of publishing: Open access
https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-023-00291-9
Permanent Link: https://hdl.handle.net/11104/0345689 - 2.0569371 - BFÚ 2023 RIV GB eng J - Journal Article
Kejnovský, Eduard - Jedlička, Pavel
Nucleic acids movement and its relation to genome dynamics of repetitive DNA Is cellular and intercellular movement of DNA and RNA molecules related to the evolutionary dynamic genome components?
BioEssays. Roč. 44, č. 4 (2022), č. článku e2100242. ISSN 0265-9247. E-ISSN 1521-1878
R&D Projects: GA ČR(CZ) GA18-00258S; GA ČR(CZ) GA21-00580S
Institutional support: RVO:68081707
Keywords : dna * genome dynamics * horizontal gene transfer * migration * movement * small RNA * transposable elements
OECD category: Biochemistry and molecular biology
Impact factor: 4, year: 2022
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/10.1002/bies.202100242
Permanent Link: https://hdl.handle.net/11104/0340689 - 3.0564038 - BFÚ 2023 RIV NL eng J - Journal Article
Stein, M. - Hile, S. E. - Weissensteiner, M. H. - Lee, M. - Zhang, S. - Kejnovský, Eduard - Kejnovská, Iva - Makova, K.D. - Eckert, K.
Variation in G-quadruplex sequence and topology differentially impacts human DNA polymerase fidelity.
Dna Repair. Roč. 119, NOV 2022 (2022), č. článku 103402. ISSN 1568-7864. E-ISSN 1568-7856
Institutional support: RVO:68081707
Keywords : Non-B DNA * Error signature * DNA replication * DNA polymerase ?
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.8, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S1568786422001355?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340580 - 4.0560041 - BFÚ 2023 RIV GB eng J - Journal Article
Lexa, Matej - Čechová, M. - Nguyen, S. H. - Jedlička, Pavel - Tokan, Viktor - Kubát, Zdeněk - Hobza, Roman - Kejnovský, Eduard
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.
Bioinformatics. Roč. 38, č. 16 (2022), s. 4030-4032. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA21-00580S
Institutional support: RVO:68081707
Keywords : TRANSPOSABLE ELEMENTS * SEQUENCE
OECD category: Biochemistry and molecular biology
Impact factor: 5.8, year: 2022
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article/38/16/4030/6628581?login=true
Permanent Link: https://hdl.handle.net/11104/0340534 - 5.0542265 - BFÚ 2022 RIV CH eng J - Journal Article
Tokan, Viktor - Lorenzo, Jose Luis Rodriguez - Jedlička, Pavel - Kejnovská, Iva - Hobza, Roman - Kejnovský, Eduard
Quadruplex-Forming Motif Inserted into 3 ' UTR of Ty1his3-AI Retrotransposon Inhibits Retrotransposition in Yeast.
Biology. Roč. 10, č. 4 (2021), č. článku 347. E-ISSN 2079-7737
R&D Projects: GA ČR(CZ) GA18-00258S; GA ČR(CZ) GA21-00580S
Institutional support: RVO:68081707
Keywords : Ty1 LTR retrotransposon * G-quadruplex * retrotransposition * N-methyl mesoporphyrin (NMM) * Pif1 helicase * yeast
OECD category: Other biological topics
Impact factor: 5.168, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2079-7737/10/4/347
Permanent Link: http://hdl.handle.net/11104/0319724 - 6.0539921 - BFÚ 2021 RIV GB eng J - Journal Article
Lexa, Matej - Jedlička, Pavel - Vanat, I. - Červeňanský, Michal - Kejnovský, Eduard
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Bioinformatics. Roč. 36, č. 20 (2020), s. 4991-4999. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA18-00258S
Institutional support: RVO:68081707
Keywords : transposable elements * visualization * annotation * identification * paleontology
OECD category: Biochemical research methods
Impact factor: 6.937, year: 2020
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article/36/20/4991/5871348
Permanent Link: http://hdl.handle.net/11104/0317612 - 7.0539877 - BFÚ 2021 RIV CH eng J - Journal Article
Jedlička, Pavel - Lexa, M. - Kejnovský, Eduard
What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?
Frontiers in Plant Science. Roč. 11, MAY 20 2020 (2020), č. článku 644. ISSN 1664-462X. E-ISSN 1664-462X
R&D Projects: GA ČR(CZ) GA18-00258S
Institutional support: RVO:68081707
Keywords : rna-mediated recombination * transposable elements * genome size * evolution * rice * plants
OECD category: Plant sciences, botany
Impact factor: 5.754, year: 2020
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fpls.2020.00644/full
Permanent Link: http://hdl.handle.net/11104/0317575 - 8.0520376 - BFÚ 2020 RIV GB eng J - Journal Article
Jedlička, Pavel - Lexa, M. - Vanat, I. - Hobza, Roman - Kejnovský, Eduard
Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.
Mobile DNA. Roč. 10, č. 1 (2019), č. článku 50. ISSN 1759-8753. E-ISSN 1759-8753
R&D Projects: GA ČR(CZ) GA18-00258S; GA ČR GA16-08698S
Institutional support: RVO:68081707
Keywords : insertion site preferences * transposable elements * molecular-biology * genome structure * dna segments
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.161, year: 2019
Method of publishing: Open access
https://mobilednajournal.biomedcentral.com/track/pdf/10.1186/s13100-019-0186-z
Permanent Link: http://hdl.handle.net/11104/0305055 - 9.0506513 - BFÚ 2020 RIV NL eng J - Journal Article
Hobza, Roman - Kubát, Zdeněk - Čegan, Radim - Jesionek, Wojciech - Vyskot, Boris - Kejnovský, Eduard
Impact of repetitive DNA on sex chromosome evolution in plants.
Chromosome Research. Roč. 23, č. 3 (2015), s. 561-570. ISSN 0967-3849. E-ISSN 1573-6849
R&D Projects: GA ČR GBP501/12/G090; GA ČR GAP501/12/2220; GA ČR GJ15-21523Y; GA ČR GA15-02891S
Institutional support: RVO:68081707 ; RVO:61389030
Keywords : primitive y-chromosome * transposable elements * dioecious plant * silene-latifolia * retrotransposon
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (UEB-Q)
Impact factor: 2.590, year: 2015
Method of publishing: Limited access
https://link.springer.com/article/10.1007%2Fs10577-015-9496-2
Permanent Link: http://hdl.handle.net/11104/0297745 - 10.0503226 - BFÚ 2019 RIV US eng J - Journal Article
Lexa, M. - Lapar, R. - Jedlička, Pavel - Vanat, I. - Červeňanský, Michal - Kejnovský, Eduard
TE-nester: a recursive software tool for structure-based discovery of nested transposable elements.
IEEE International Conference on Bioinformatics and Biomedicine-BIBM. Proceedings 2018 IEEE International Conference on Bioinformatics and Biomedecine (BIBM). - (Zheng, H.; Callejas, Z.; Griol, D.; Wang, H.; Hu, X.; Schmidt, H.; Baumbach, J.; Dickerson, J.; Zhang, L.). Roč. 2018, č. 2018 (2018), s. 2776-2778. ISBN 978-1-5386-5488-0. ISSN 2156-1125
Institutional support: RVO:68081707
Keywords : annotation * efficient * visualization * finder
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Method of publishing: Limited access
https://ieeexplore.ieee.org/document/8621071
Permanent Link: http://hdl.handle.net/11104/0295050