Search results
- 1.0561587 - ÚI 2023 RIV CZ eng J - Journal Article
Matonoha, Ctirad - Papáček, Štěpán - Lynnyk, Volodymyr
On an optimal setting of delays for the D-QSSA model reduction method applied to a class of chemical reaction networks.
Applications of Mathematics. Roč. 67, SI 6 (2022), s. 831-857. ISSN 0862-7940. E-ISSN 1572-9109
R&D Projects: GA ČR(CZ) GA19-05872S
Institutional support: RVO:67985807 ; RVO:67985556
Keywords : reaction network * model reduction * singular perturbation * quasi-steady-state approximation * D-QSSA method * optimization
OECD category: Pure mathematics; Applied mathematics (UTIA-B)
Impact factor: 0.7, year: 2022
Method of publishing: Open access with time embargo
https://dx.doi.org/10.21136/AM.2022.0136-21
Permanent Link: https://hdl.handle.net/11104/0334165 - 2.0524330 - ÚI 2021 RIV PL eng J - Journal Article
Kalina, Jan - Matonoha, Ctirad
A Sparse Pair-preserving Centroid-based Supervised Learning Method for High-dimensional Biomedical Data or Images.
Biocybernetics and Biomedical Engineering. Roč. 40, č. 2 (2020), s. 774-786. ISSN 0208-5216. E-ISSN 0208-5216
R&D Projects: GA ČR(CZ) GA19-05704S
Institutional support: RVO:67985807
Keywords : supervised learning * high-dimensional data * robustness * sparsity * nonlinear optimization
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 4.314, year: 2020
Method of publishing: Limited access
http://dx.doi.org/10.1016/j.bbe.2020.03.008
Permanent Link: http://hdl.handle.net/11104/0308691 - 3.0503670 - ÚI 2020 RIV CZ eng J - Journal Article
Duintjer Tebbens, Jurjen - Matonoha, Ctirad - Matthios, A. - Papáček, Š.
On Parameter Estimation in an In Vitro Compartmental Model for Drug-Induced Enzyme Production in Pharmacotherapy.
Applications of Mathematics. Roč. 64, č. 2 (2019), s. 253-277. ISSN 0862-7940. E-ISSN 1572-9109
Grant - others:CENAKVA(CZ) CZ.1.05/2.1.00/01.0024; GA MŠk(CZ) LO1205; CENAKVA(CZ) CZ.1.05/2.1.00/19.0380
Institutional support: RVO:67985807
Keywords : pharmacotherapy * pharmacodynamic modelling * constrained optimization * parameter estimation
OECD category: Pure mathematics
Impact factor: 0.544, year: 2019
Method of publishing: Open access with time embargo
https://articles.math.cas.cz/10.21136/AM.2019.0284-18
Permanent Link: http://hdl.handle.net/11104/0295480 - 4.0473666 - ÚI 2018 RIV GB eng J - Journal Article
Papáček, Š. - Macdonald, B. - Matonoha, Ctirad
Closed-Form Formulas vs. PDE Based Numerical Solution for the FRAP Data Processing: Theoretical and Practical Comparison.
Computers & Mathematics With Applications. Roč. 73, č. 8 (2017), s. 1673-1683. ISSN 0898-1221. E-ISSN 1873-7668
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205
Institutional support: RVO:67985807
Keywords : fluorescence recovery after photobleaching (FRAP) * parameter estimation * sensitivity analysis * partial differential equation (PDE)
OECD category: Applied mathematics
Impact factor: 1.860, year: 2017
Permanent Link: http://hdl.handle.net/11104/0270797 - 5.0445719 - ÚI 2016 RIV NL eng J - Journal Article
Matonoha, Ctirad - Papáček, Š.
On the Connection and Equivalence of Two Methods for Solving an ill-posed Inverse Problem Based on FRAP Data.
Journal of Computational and Applied Mathematics. Roč. 290, 15 December (2015), s. 598-608. ISSN 0377-0427. E-ISSN 1879-1778
Grant - others:GA MŠk(CZ) ED2.1.00/01.0024; GA MŠk(CZ) LO1205
Institutional support: RVO:67985807
Keywords : inverse problem * parameter identification * Tikhonov regularization * least squares with a quadratic constraint * L-curve * FRAP
Subject RIV: BA - General Mathematics
Impact factor: 1.328, year: 2015
Permanent Link: http://hdl.handle.net/11104/0247781File Download Size Commentary Version Access 0445719.pdf 1 649.2 KB Author´s preprint require - 6.0435849 - MBÚ 2015 RIV US eng J - Journal Article
Kaňa, Radek - Kotabová, Eva - Lukeš, Martin - Papáček, Š. - Matonoha, Ctirad - Liu, L.N. - Prášil, Ondřej - Mullineaux, C.W.
Phycobilisome Mobility and Its Role in the Regulation of Light Harvesting in Red Algae.
Plant Physiology. Roč. 165, č. 4 (2014), s. 1618-1631. ISSN 0032-0889. E-ISSN 1532-2548
R&D Projects: GA ČR GAP501/12/0304; GA MŠMT ED2.1.00/03.0110
Institutional support: RVO:61388971 ; RVO:67985807
Keywords : EXCITATION-ENERGY TRANSFER * CYANOBACTERIAL THYLAKOID MEMBRANES * MICROALGA PORPHYRIDIUM-CRUENTUM
Subject RIV: EE - Microbiology, Virology; BA - General Mathematics (UIVT-O)
Impact factor: 6.841, year: 2014
Permanent Link: http://hdl.handle.net/11104/0239776 - 7.0405206 - UIVT-O 330373 RIV US eng J - Journal Article
Lukšan, Ladislav - Matonoha, Ctirad - Vlček, Jan
Interior Point Methods for Large-Scale Nonlinear Programming.
[Metody vnitřních bodů pro velké řídké úlohy nelineárního programování.]
Optimization Methods & Software. Roč. 20, č. 4-5 (2005), s. 569-582. ISSN 1055-6788. E-ISSN 1029-4937
R&D Projects: GA AV ČR IAA1030405
Institutional research plan: CEZ:AV0Z10300504
Keywords : nonlinear programming * interior point methods * KKT systems * indefinite preconditioners * filter methods * algorithms
Subject RIV: BA - General Mathematics
Impact factor: 0.477, year: 2005
Permanent Link: http://hdl.handle.net/11104/0125399 - 8.0385695 - ÚI 2013 RIV CZ eng J - Journal Article
Finěk, V. - Matonoha, Ctirad
On The Problem of Variability of Interval Data.
ACC JOURNAL. Roč. 18, č. 4 (2012), s. 76-84. ISSN 1803-9782
Grant - others:ESF(XE) CZ.1.07/2.3.00/09.0155
Institutional support: RVO:67985807
Keywords : interval data * computation of variance * theoretical analysis
Subject RIV: BA - General Mathematics
Permanent Link: http://hdl.handle.net/11104/0007389File Download Size Commentary Version Access 0385695.pdf 0 548.3 KB Author´s preprint open-access - 9.0376216 - ÚI 2013 RIV GB eng J - Journal Article
Papáček, Š. - Kaňa, Radek - Matonoha, Ctirad
Estimation of diffusivity of phycobilisomes on thylakoid membrane based on spatio-temporal FRAP images.
Mathematical and Computer Modelling. Roč. 57, 7-8 (2013), s. 1907-1912. ISSN 0895-7177
R&D Projects: GA ČR GP206/09/P094; GA ČR GA201/09/1957; GA MŠMT(CZ) ED2.1.00/03.0110
Grant - others:GA JU(CZ) 152/2010/Z
Institutional research plan: CEZ:AV0Z50200510; CEZ:AV0Z10300504
Keywords : parameter estimation * FRAP * boundary value problem * optimization
Subject RIV: BA - General Mathematics; EE - Microbiology, Virology (MBU-M)
Impact factor: 2.020, year: 2013
Permanent Link: http://hdl.handle.net/11104/0208678 - 10.0366653 - ÚTIA 2013 RIV GB eng J - Journal Article
Červinka, Michal - Matonoha, Ctirad - Outrata, Jiří
On the computation of relaxed pessimistic solutions to MPECs.
Optimization Methods & Software. Roč. 28, č. 1 (2013), s. 186-206. ISSN 1055-6788. E-ISSN 1029-4937
R&D Projects: GA MŠMT 1M0572; GA ČR GA201/09/1957
Institutional research plan: CEZ:AV0Z10300504; CEZ:AV0Z10750506
Keywords : MPEC * equilibrium constraints * pessimistic solution * value function * relaxed and approximate solutions
Subject RIV: BA - General Mathematics
Impact factor: 1.210, year: 2013
Permanent Link: http://hdl.handle.net/11104/0201555