Search results
- 1.0581740 - BFÚ 2024 RIV NL eng J - Journal Article
Dzurov, M. - Pospíšilová, S. - Krafčíková, Michaela - Trantírek, L. - Vojtová, L. - Ryneš, J.
A thermosensitive gel matrix for bioreactor-assisted in-cell NMR of nucleic acids and proteins.
Journal of Biomolecular NMR. Roč. 77, č. 5-6 (2023), s. 203-215. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : peg-plga copolymer * drug-delivery * hydrogels * spectroscopy * stability * agarose * dna * pla-peg-pla * Thermosensitive hydrogel * Cell immobilization * Bioreactor * In-cell NMR
OECD category: Biochemistry and molecular biology
Impact factor: 2.7, year: 2022
Method of publishing: Open access
https://link.springer.com/article/10.1007/s10858-023-00422-7
Permanent Link: https://hdl.handle.net/11104/0350097 - 2.0571533 - BFÚ 2024 RIV US eng J - Journal Article
Školáková, Petra - Gajarský, M. - Palacký, Jan - Šubert, Denis - Renčiuk, Daniel - Trantírek, L. - Mergny, Jean-Louis - Vorlíčková, Michaela
DNA i-motif formation at neutral pH is driven by kinetic partitioning.
Nucleic Acids Research. Roč. 51, č. 6 (2023), s. 2950-2962. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA19-17063S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : G-QUADRUPLEX * THERMODYNAMICS * STABILITY * PROMOTER
OECD category: Biochemistry and molecular biology
Impact factor: 14.9, year: 2022
Method of publishing: Open access
https://academic.oup.com/nar/article/51/6/2950/7076469?login=true
Permanent Link: https://hdl.handle.net/11104/0349778 - 3.0555334 - BFÚ 2022 RIV CH eng J - Journal Article
Krafčík, D. - Istvankova, E. - Dzatko, S. - Viskova, P. - Foldynová-Trantírková, Silvie - Trantírek, L.
Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy.
International Journal of Molecular Sciences. Roč. 22, č. 11 (2021), č. článku 6042. E-ISSN 1422-0067
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : structures in-vitro * human telomere * nucleic-acids * dna * rna * ligands
OECD category: Biochemistry and molecular biology
Impact factor: 6.208, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1422-0067/22/11/6042
Permanent Link: http://hdl.handle.net/11104/0329843 - 4.0554847 - BFÚ 2022 RIV DE eng J - Journal Article
Kejnovská, Iva - Stadlbauer, Petr - Trantírek, L. - Renčiuk, Daniel - Gajarský, M. - Krafčík, D. - Palacký, Jan - Bednářová, Klára - Šponer, Jiří - Mergny, Jean-Louis - Vorlíčková, Michaela
G-Quadruplex Formation by DNA Sequences Deficient in Guanines: Two Tetrad Parallel Quadruplexes Do Not Fold Intramolecularly.
Chemistry - A European Journal. Roč. 27, č. 47 (2021), s. 12115-12125. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR(CZ) GA19-17063S; GA ČR(CZ) GA20-20229S; GA ČR(CZ) GA21-23718S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : amber force-field * human telomere * molecular-dynamics * nucleic-acids * k+ solution * crystal-structure
OECD category: Biochemistry and molecular biology
Impact factor: 5.020, year: 2021
Method of publishing: Limited access
https://chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/chem.202100895
Permanent Link: http://hdl.handle.net/11104/0329475 - 5.0542802 - BFÚ 2022 RIV GB eng J - Journal Article
Zivkovic, M.L. - Gajarský, M. - Bekova, K. - Stadlbauer, Petr - Vicherek, L. - Petrová, Magdalena - Fiala, R. - Rosenberg, Ivan - Šponer, Jiří - Plavec, J. - Trantírek, L.
Insight into formation propensity of pseudocircular DNA G-hairpins.
Nucleic Acids Research. Roč. 49, č. 4 (2021), s. 2317-2332. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA17-12703S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707 ; RVO:61388963
Keywords : molecular-dynamics simulations * g-quadruplex structure * amber force-field * g-triplex * folding pathways
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (UOCHB-X)
Impact factor: 19.160, year: 2021
Method of publishing: Open access
https://academic.oup.com/nar/article/49/4/2317/6125665
Permanent Link: http://hdl.handle.net/11104/0320148 - 6.0536199 - BFÚ 2023 RIV DE eng J - Journal Article
Broft, P. - Dzatko, S. - Krafčíková, Michaela - Wacker, A. - Haensel-Hertsch, R. - Dotsch, V. - Trantírek, L. - Schwalbe, H.
In-Cell NMR Spectroscopy of Functional Riboswitch Aptamers in Eukaryotic Cells.
Angewandte Chemie - International Edition. Roč. 60, č. 2 (2021), s. 865-872. ISSN 1433-7851. E-ISSN 1521-3773
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : g-quadruplex structures * sensing riboswitch * ligand-binding * structural basis * rna * dna * proteins
OECD category: Analytical chemistry
Impact factor: 16.823, year: 2021
Method of publishing: Open access with time embargo
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/anie.202007184
Permanent Link: http://hdl.handle.net/11104/0314006 - 7.0536192 - BFÚ 2021 RIV GB eng J - Journal Article
Dzatko, S. - Fiala, R. - Haensel-Hertsch, R. - Foldynová-Trantírková, Silvie - Trantírek, L.
In-cell NMR Spectroscopy of Nucleic Acids.
New Developments in NMR. New Developments in NMR. - (Ito, Y.; Dotsch, V.; Shirakawa, M.). Roč. 21, č. 2020 (2020), s. 272-297. ISBN 978-1-78801-307-9. ISSN 2044-253X
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : g-quadruplex structures * reversible membrane permeabilization * human telomeric dna * living cells * water suppression * molecular switch * gene-expression
OECD category: Biochemistry and molecular biology
Method of publishing: Limited access
https://pubs.rsc.org/en/content/chapter/bk9781788012171-00272/978-1-78801-217-1
Permanent Link: http://hdl.handle.net/11104/0314002 - 8.0536135 - BFÚ 2021 RIV NL eng J - Journal Article
Školáková, Petra - Badri, Z. - Foldynová-Trantírková, Silvie - Ryneš, J. - Šponer, Jiří - Fojtová, Miloslava - Fajkus, Jiří - Marek, R. - Vorlíčková, Michaela - Mergny, Jean-Louis - Trantírek, L.
Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA.
Biochimica et Biophysica Acta-General Subjects. Roč. 1864, č. 9 (2020), č. článku 129651. ISSN 0304-4165. E-ISSN 1872-8006
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA19-17063S
Institutional support: RVO:68081707
Keywords : base-pairing energies * promoter region * g-quadruplex * noncovalent interactions * thermal-stability * molecular switch * rational design
OECD category: Biochemistry and molecular biology
Impact factor: 3.770, year: 2020
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S030441652030163X?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0313957 - 9.0533597 - ÚŽFG 2021 RIV CH eng J - Journal Article
Gregor, T. - Kunová Bosáková, Michaela - Nita, Alexandru - Abraham, S. P. - Fafílek, Bohumil - Černohorský, N. H. - Ryneš, J. - Foldynová Trantírková, S. - Žáčková, D. - Mayer, J. - Trantírek, L. - Krejčí, Pavel
Elucidation of protein interactions necessary for the maintenance of the BCR-ABL signaling complex.
Cellular and Molecular Life Sciences. Roč. 77, č. 19 (2020), s. 3885-3903. ISSN 1420-682X. E-ISSN 1420-9071
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:67985904 ; RVO:61388963
Keywords : BCR-ABL * chronic myeloid leukemia * signaling * protein complex
OECD category: Developmental biology
Impact factor: 9.261, year: 2020
Method of publishing: Limited access
https://asep.lib.cas.cz/arl-cav/cs/csg/?repo=crepo1&key=40768217680
Permanent Link: http://hdl.handle.net/11104/0311941 - 10.0533113 - ÚOCHB 2021 RIV DE eng J - Journal Article
Giassa, I.C. - Vavrinská, A. - Zelinka, J. - Šebera, Jakub - Sychrovský, Vladimír - Boelens, R. - Fiala, R. - Trantírek, L.
HERMES – A Software Tool for the Prediction and Analysis of Magnetic-Field-Induced Residual Dipolar Couplings in Nucleic Acids.
ChemPlusChem. Roč. 85, č. 9 (2020), s. 2177-2185. ISSN 2192-6506. E-ISSN 2192-6506
R&D Projects: GA ČR(CZ) GA19-13436S
Institutional support: RVO:61388963
Keywords : field-induced residual dipolar couplings * magnetic susceptibility anisotropy * NMR * nucleic acids * prediction software
OECD category: Physical chemistry
Impact factor: 2.863, year: 2020
Method of publishing: Limited access
https://doi.org/10.1002/cplu.202000505
Permanent Link: http://hdl.handle.net/11104/0311738