Search results
- 1.0578599 - ÚOCHB 2024 RIV CH eng J - Journal Article
Tanaka, Y. - Yamanaka, D. - Morioka, S. - Yamaguchi, T. - Morikawa, M. - Kodama, T. S. - Sychrovský, Vladimír - Kojima, C. - Hattori, Y.
Physicochemical Characterization of the Catalytic Unit of Hammerhead Ribozyme and Its Relationship with the Catalytic Activity.
Biophysica. Roč. 2, č. 3 (2022), s. 221-239. E-ISSN 2673-4125
Institutional support: RVO:61388963
Keywords : hammerhead ribozyme * mechanism * pKa * pH-titration * NMR spectroscopy * G12 * G10.1
OECD category: Biophysics
Method of publishing: Open access
https://doi.org/10.3390/biophysica2030022
Permanent Link: https://hdl.handle.net/11104/0347566 - 2.0557747 - ÚFA 2023 RIV CH eng J - Journal Article
Kikuchi, T. - Araki, T. - Hashimoto, K.K. - Ebihara, Y. - Tanaka, T. - Nishimura, Y. - Vichare, G. - Sinha, A.K. - Chum, Jaroslav - Hosokawa, K. - Tomizawa, I. - Tanaka, Y. - Kadokura, A.
Instantaneous Achievement of the Hall and Pedersen–Cowling Current Circuits in Northern and Southern Hemispheres During the Geomagnetic Sudden Commencement on 12 May 2021.
Frontiers in Astronomy and Space Sciences. Roč. 9, May (2022), č. článku 879314. E-ISSN 2296-987X
R&D Projects: GA ČR(CZ) GA18-01969S
Institutional support: RVO:68378289
Keywords : geomagnetic sudden commencement * Hall current circuit * Pedersen–Cowling current circuit * simultaneous onset of preliminary impulse * morning/afternoon symmetry/asymmetry * northern and southern hemispheric symmetry/asymmetry * HF Doppler sounder * global simulation
OECD category: Fluids and plasma physics (including surface physics)
Impact factor: 3, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fspas.2022.879314/full
Permanent Link: http://hdl.handle.net/11104/0331668File Download Size Commentary Version Access 0557747_Front in Astronomy_Chum_2022.pdf 1 1.4 MB Publisher’s postprint require - 3.0523810 - ÚOCHB 2021 RIV US eng J - Journal Article
Šebesta, F. - Šebera, Jakub - Sychrovský, Vladimír - Tanaka, Y. - Burda, J. V.
QM and QM/MM umbrella sampling MD study of the formation of Hg(II)–thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH.
Journal of Computational Chemistry. Roč. 41, č. 16 (2020), s. 1509-1520. ISSN 0192-8651. E-ISSN 1096-987X
R&D Projects: GA ČR(CZ) GA18-14990S
Institutional support: RVO:61388963
Keywords : ab initio molecular dynamics (MD) simulations * metal–NA base interactions * QM/MM calculations * thermodynamics
OECD category: Physical chemistry
Impact factor: 3.376, year: 2020
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/abs/10.1002/jcc.26194
Permanent Link: http://hdl.handle.net/11104/0308102 - 4.0502367 - FZÚ 2019 RIV US eng J - Journal Article
Dračínský, M. - Šála, M. - Klepetářová, B. - Šebera, Jakub - Fukal, J. - Holečková, V. - Tanaka, Y. - Nencka, R. - Sychrovský, V.
Benchmark theoretical and experimental study on 15N NMR Shifts of oxidatively damaged guanine.
Journal of Physical Chemistry B. Roč. 120, č. 5 (2016), s. 915-925. ISSN 1520-6106. E-ISSN 1520-5207
Institutional support: RVO:68378271
Keywords : damaged DNA * 9-ethyl-8-oxoguanine * NMR * DTF
OECD category: Biophysics
Impact factor: 3.177, year: 2016
Permanent Link: http://hdl.handle.net/11104/0294310 - 5.0502365 - FZÚ 2019 RIV NL eng J - Journal Article
Šebera, Jakub - Tanaka, Y. - Ono, A. - Sychrovský, V.
The effect of chemical modification of DNA base on binding of HgII and AgI in metal-mediated base pairs.
Inorganica chimica acta. Roč. 452, Oct (2016), s. 199-204. ISSN 0020-1693. E-ISSN 1873-3255
Institutional support: RVO:68378271
Keywords : DFT * NMR parameters * metallo-base pair * Hg * Ag
OECD category: Biophysics
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0294308 - 6.0502364 - FZÚ 2019 RIV GB eng J - Journal Article
Tanaka, Y. - Kondo, J. - Sychrovský, V. - Šebera, Jakub - Dairaku, T. - Saneyoshi, H. - Urata, H. - Torigoe, H. - Ono, A.
Structures, physicochemical properties and applications of T-HgII-T, C-AgI-C and other metallo-base-pairs.
Chemical Communications. Roč. 51, č. 98 (2015), s. 17343-17360. ISSN 1359-7345. E-ISSN 1364-548X
Institutional support: RVO:68378271
Keywords : ion-biomolecule interactions * metallo-base-pairs * C–AgI–C * T–HgII–T
OECD category: Biophysics
Impact factor: 6.567, year: 2015
Permanent Link: http://hdl.handle.net/11104/0294307 - 7.0494039 - FZÚ 2019 RIV NL eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Ono, A. - Sychrovský, V. - Kojima, C. - Tanaka, Y.
Hg-II/Ag-I-mediated base pairs and their NMR spectroscopic studies.
Inorganica chimica acta. Roč. 452, Oct (2016), s. 34-42. ISSN 0020-1693. E-ISSN 1873-3255
Institutional support: RVO:68378271
Keywords : metallo-base pair * NMR spectroscopy * structure
OECD category: Biophysics
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0287282 - 8.0494037 - FZÚ 2019 RIV GB eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Yamanaka, D. - Otaki, H. - Kikkawa, S. - Kondo, Y. - Katahira, R. - Bickelhaupt, F. M. - Guerra, C. F. - Ono, A. - Sychrovský, V. - Kojima, C. - Tanaka, Y.
Direct detection of the mercury-nitrogen bond in the thymine-Hg-II-thymine base-pair with Hg-199 NMR spectroscopy.
Chemical Communications. Roč. 51, č. 40 (2015), s. 8488-8491. ISSN 1359-7345. E-ISSN 1364-548X
Institutional support: RVO:68378271
Keywords : Nuclear Magnetic Resonance * relativistic DFT * metal DNA
OECD category: Biophysics
Impact factor: 6.567, year: 2015
Permanent Link: http://hdl.handle.net/11104/0287281 - 9.0475942 - ÚOCHB 2018 RIV GB eng J - Journal Article
Šebera, Jakub - Hattori, Y. - Sato, D. - Řeha, David - Nencka, Radim - Kohno, T. - Kojima, C. - Tanaka, Y. - Sychrovský, Vladimír
The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine.
Nucleic Acids Research. Roč. 45, č. 9 (2017), s. 5231-5242. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : 8-oxoguanine * hOGG1 * QM/MM * NMR * base-excision repair
OECD category: Physical chemistry
Impact factor: 11.561, year: 2017
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx157
Permanent Link: http://hdl.handle.net/11104/0272532 - 10.0466145 - ÚOCHB 2017 RIV NL eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Hg-II/Ag-I-mediated base pairs and their NMR spectroscopic studies.
Inorganica chimica acta. Roč. 452, Oct 1 (2016), s. 34-42. ISSN 0020-1693. E-ISSN 1873-3255
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : NMR * Hg * Ag * metal-DNA
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264544