Search results
- 1.0511008 - ÚOCHB 2020 RIV US eng J - Journal Article
Kubáň, V. - Srb, Pavel - Štégnerová, H. - Padrta, P. - Zachrdla, M. - Jeseňáková, Z. - Šanderová, Hana - Vítovská, Dragana - Krásný, Libor - Koval, Tomáš - Dohnálek, Jan - Ziemska-Legiecka, J. - Grynberg, M. - Jarnot, P. - Gruca, A. - Jensen, M. R. - Blackledge, M. - Žídek, L.
Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase.
Journal of the American Chemical Society. Roč. 141, č. 42 (2019), s. 16817-16828. ISSN 0002-7863. E-ISSN 1520-5126
R&D Projects: GA ČR(CZ) GA19-12956S; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388963 ; RVO:61388971 ; RVO:86652036
Keywords : residual dipolar couplings * Bacillus subtilis * gene expression
OECD category: Biochemistry and molecular biology; Microbiology (MBU-M); Biochemistry and molecular biology (BTO-N)
Impact factor: 14.612, year: 2019
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/jacs.9b07837
Permanent Link: http://hdl.handle.net/11104/0301354File Download Size Commentary Version Access 121_Quantitative Conformational Analysis of Functionally Important.pdf 8 1.9 MB Publisher’s postprint require - 2.0490468 - ÚOCHB 2019 RIV GB eng J - Journal Article
Špačková, N. - Trošanová, Z. - Šebesta, F. - Jansen, S. - Burda, J. V. - Srb, Pavel - Zachrdla, M. - Žídek, L. - Kozelka, J.
Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants.
Physical Chemistry Chemical Physics. Roč. 20, č. 18 (2018), s. 12664-12677. ISSN 1463-9076. E-ISSN 1463-9084
Institutional support: RVO:61388963
Keywords : nuclear magnetic resonance * molecular dynamics * crystal structures
OECD category: Physical chemistry
Impact factor: 3.567, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284702 - 3.0483356 - ÚOCHB 2018 RIV NL eng J - Journal Article
Srb, Pavel - Nováček, J. - Kadeřávek, P. - Rabatinová, Alžběta - Krásný, Libor - Žídková, Jitka - Bobálová, Janette - Sklenář, V. - Žídek, L.
Triple resonance 15N NMR relaxation experiments for studies of intrinsically disordered proteins.
Journal of Biomolecular NMR. Roč. 69, č. 3 (2017), s. 133-146. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA ČR GA13-16842S; GA MŠMT(CZ) LO1304
Institutional support: RVO:61388963 ; RVO:61388971 ; RVO:68081715
Keywords : nuclear magnetic resonance * relaxation * non-uniform sampling * intrinsically disordered proteins
OECD category: Analytical chemistry; Microbiology (MBU-M); Analytical chemistry (UIACH-O)
Impact factor: 2.534, year: 2017
Permanent Link: http://hdl.handle.net/11104/0278711 - 4.0477069 - MBÚ 2018 RIV US eng J - Journal Article
Zachrdla, M. - Padrta, P. - Rabatinová, Alžběta - Šanderová, Hana - Barvík, I. - Krásný, Libor - Žídek, L.
Solution structure of domain 1.1 of the sigma(A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.
Journal of Biological Chemistry. Roč. 292, č. 28 (2017), s. 11610-11617. ISSN 0021-9258. E-ISSN 1083-351X
R&D Projects: GA ČR GA13-16842S; GA MŠMT(CZ) LQ1601
Institutional support: RVO:61388971
Keywords : Bacillus * molecular modeling * nuclear magnetic resonance (NMR)
OECD category: Microbiology
Impact factor: 4.011, year: 2017
Permanent Link: http://hdl.handle.net/11104/0273469 - 5.0471360 - BFÚ 2017 RIV US eng J - Journal Article
Kadeřávek, Pavel - Zapletal, V. - Fiala, R. - Srb, P. - Padrta, P. - Přecechtělová, J. - Šoltésová, M. - Kowalewski, J. - Widmalm, G. - Chmelík, Josef - Sklenář, V. - Žídek, L.
Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies.
Journal of Magnetic Resonance. A. Roč. 266, MAY2016 (2016), s. 23-40. ISSN 1064-1858
Institutional support: RVO:68081707 ; RVO:61388971
Keywords : molecular-orbital methods * protein backbone dynamics
Subject RIV: BO - Biophysics; EE - Microbiology, Virology (MBU-M)
Permanent Link: http://hdl.handle.net/11104/0268748 - 6.0452973 - MBÚ 2016 RIV DE eng J - Journal Article
Kubáň, V. - Nováček, J. - Bumba, Ladislav - Žídek, L.
NMR assignment of intrinsically disordered self-processing module of the FrpC protein of Neisseria meningitidis.
Biomolecular NMR Assignments. Roč. 9, č. 2 (2015), s. 435-440. ISSN 1874-2718. E-ISSN 1874-270X
R&D Projects: GA ČR(CZ) GAP207/11/0717
Institutional support: RVO:61388971
Keywords : FrpC * Self-processing module * Neisseria meningitidis
Subject RIV: EE - Microbiology, Virology
Impact factor: 0.687, year: 2015
Permanent Link: http://hdl.handle.net/11104/0253853 - 7.0439577 - MBÚ 2015 RIV NL eng J - Journal Article
Kadeřávek, P. - Zapletal, V. - Rabatinová, Alžběta - Krásný, Libor - Sklenář, V. - Žídek, L.
Spectral density mapping protocols for analysis of molecular motions in disordered proteins.
Journal of Biomolecular NMR. Roč. 58, č. 12 (2014), s. 193-207. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA ČR GA13-16842S
Institutional support: RVO:61388971
Keywords : NMR * CROSS-CORRELATED RELAXATION * N-15 NMR RELAXATION * RNA-POLYMERASE
Subject RIV: EC - Immunology; EE - Microbiology, Virology (MBU-M)
Impact factor: 3.141, year: 2014
Permanent Link: http://hdl.handle.net/11104/0242899 - 8.0438291 - ÚOCHB 2015 RIV GB eng J - Journal Article
Vymětal, Jiří - Bathula, S. R. - Černý, Jiří - Chaloupková, R. - Žídek, L. - Sklenář, V. - Vondrášek, Jiří
Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.
Protein Engineering Design and Selection. Roč. 27, č. 12 (2014), s. 463-472. ISSN 1741-0126. E-ISSN 1741-0134
R&D Projects: GA MŠMT(CZ) LH11020; GA ČR GA203/08/0114
Grant - others:GA MŠk(CZ) LO1214; GA MŠk(CZ) LM2010005; GA MŠk(CZ) ED1.1.00/02.0068
Program: ED
Institutional support: RVO:61388963 ; RVO:86652036
Keywords : protein folding * protein-structure prediction * molecular dynamics * NMR methods * CD spectroscopy
Subject RIV: CE - Biochemistry
Impact factor: 2.537, year: 2014
Permanent Link: http://hdl.handle.net/11104/0241840 - 9.0437261 - ÚOCHB 2015 RIV GB eng J - Journal Article
Obr, M. - Hadravová, Romana - Doležal, Michal - Křížová, Ivana - Papoušková, V. - Žídek, L. - Hrabal, R. - Ruml, T. - Rumlová, Michaela
Stabilization of the beta-hairpin in Mason-Pfizer monkey virus capsid protein- a critical step for infectivity.
Retrovirology. Roč. 11, Oct 30 (2014), 94/1-94/14. E-ISSN 1742-4690
R&D Projects: GA ČR(CZ) GA14-15326S; GA MŠMT LO1302
Grant - others:GA MŠk(CZ) ED1.1.00/02.0068; Seventh Framework Programme of the European Union(XE) FP7-261863
Program: ED
Institutional support: RVO:61388963
Keywords : retrovirus * assembly * M-PMV * capsid protein * maturation * beta-hairpin
Subject RIV: EE - Microbiology, Virology
Impact factor: 4.185, year: 2014
http://www.retrovirology.com/content/11/1/94
Permanent Link: http://hdl.handle.net/11104/0240968 - 10.0433309 - MBÚ 2015 RIV US eng J - Journal Article
Demo, G. - Papoušková, V. - Komárek, J. - Kadeřávek, P. - Otrusinová, O. - Srb, P. - Rabatinová, Alžběta - Krásný, Libor - Žídek, L. - Sklenář, V. - Wimmerová, M.
X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase.
Journal of Structural Biology. Roč. 187, č. 2 (2014), s. 174-186. ISSN 1047-8477. E-ISSN 1095-8657
R&D Projects: GA ČR GA13-16842S
Institutional support: RVO:61388971
Keywords : Protein crystallography * Nuclear magnetic resonance * N-terminal domain
Subject RIV: EE - Microbiology, Virology
Impact factor: 3.231, year: 2014
Permanent Link: http://hdl.handle.net/11104/0237541