Search results
- 1.0580491 - BC 2024 RIV US eng J - Journal Article
Lampe, R.H. - Coale, T.H. - Forsch, K.O. - Jabre, L.J. - Kekuewa, S. - Bertrand, E.M. - Horák, Aleš - Oborník, Miroslav - Rabines, A.J. - Rowland, E. - Zheng, H. - Andersson, A. J. - Barbeau, K. A. - Allen, A. E.
Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton.
Nature Communications. Roč. 14, č. 1 (2023), č. článku 7215. E-ISSN 2041-1723
R&D Projects: GA ČR(CZ) GA21-03224S; GA MŠMT(CZ) EF16_019/0000759
Institutional support: RVO:60077344
Keywords : southern-ocean phytoplankton * dissolved organic-matter * sea co2 fluxes * plankton communities * marine diatom * spatiotemporal variability * microcosm experiments * sequence alignment * gene-expression * carbonic-acid
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-023-42949-1
Permanent Link: https://hdl.handle.net/11104/0349265 - 2.0555207 - BC 2022 RIV GB eng J - Journal Article
Turnsek, J. - Brunson, J.K. - Viedma, M. - Deerinck, T.J. - Horák, Aleš - Oborník, Miroslav - Bielinski, V.A. - Allen, A. E.
Proximity proteomics in a marine diatom reveals a putative cell surface-tochloroplast iron trafficking pathway.
eLife. Roč. 10, FEB 16 2021 (2021), č. článku e52770. ISSN 2050-084X. E-ISSN 2050-084X
R&D Projects: GA ČR(CZ) GA21-03224S; GA MŠMT(CZ) EF16_019/0000759
Institutional support: RVO:60077344
Keywords : engineered ascorbate peroxidase * fructose bisphosphate aldolase * phaeodactylum-tricornutum * transferrin receptor * protein-phosphorylation * functional diversity * sequence alignment * fluorescent-probes * living cells * h+-atpase
OECD category: Cell biology
Impact factor: 8.713, year: 2021
Method of publishing: Open access
https://elifesciences.org/articles/52770
Permanent Link: http://hdl.handle.net/11104/0329724 - 3.0538232 - BC 2021 RIV GB eng J - Journal Article
Horák, Aleš - Allen, A. E. - Oborník, Miroslav
Common origin of ornithine-urea cycle in opisthokonts and stramenopiles.
Scientific Reports. Roč. 10, č. 1 (2020), č. článku 16687. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GA18-13458S; GA MŠMT(CZ) EF16_019/0000759
Grant - others:Gordon and Betty Moore Foundation(US) GBMF3828
Institutional support: RVO:60077344
Keywords : nitric-oxide * sequence alignment * generation * tree * red
OECD category: Cell biology
Impact factor: 4.380, year: 2020
Method of publishing: Open access
https://www.nature.com/articles/s41598-020-73715-8.pdf
Permanent Link: http://hdl.handle.net/11104/0316059 - 4.0537241 - BC 2021 RIV GB eng J - Journal Article
Faktorová, Drahomíra - Nisbet, R.E.R. - Robledo, J.A.F. - Casacuberta, E. - Sudek, L. - Allen, A. E. - Ares, M. - Areste, C. - Balestreri, C. - Barbrook, A.C. - Beardslee, P. - Bender, S. - Booth, D.S. - Bowler, C. - Breglia, S.A. - Brownlee, C. - Burger, G. - Cerutti, H. - Cesaroni, R. - Chiurillo, M.A. - Clemente, T. - Coles, D.B. - Collier, J.L. - Cooney, E.C. - Coyne, K. - Docampo, R. - Dupont, C.L. - Edgcomb, V. - Einarsson, E. - Elustondo, P.A. - Federici, F. - Freire-Beneitez, V. - Freyria, N.J. - Fukuda, K. - Garcia, P.A. - Girguis, P.R. - Gomaa, F. - Hampl, V. - Kachale, Ambar - Kaur, Binnypreet - Keeling, P. J. - Vanclová-Novák, A.M.G. - Pyrih, J. - Lukeš, Julius … Total 113 authors
Genetic tool development in marine protists: emerging model organisms for experimental cell biology.
Nature Methods. Roč. 17, č. 5 (2020), s. 481-494. ISSN 1548-7091. E-ISSN 1548-7105
R&D Projects: GA MŠMT(CZ) EF16_019/0000759
Grant - others:Gordon and Betty Moore Foundation(US) GMBM4982.01
Institutional support: RVO:60077344
Keywords : homologous recombination * transformation * genome
OECD category: Microbiology
Impact factor: 28.547, year: 2020
Method of publishing: Open access
https://www.nature.com/articles/s41592-020-0796-x
Permanent Link: http://hdl.handle.net/11104/0314982 - 5.0520493 - BC 2020 RIV GB eng J - Journal Article
Smith, S.R. - Dupont, C.L. - McCarthy, J.K. - Broddrick, J.T. - Oborník, Miroslav - Horák, Aleš - Füssy, Zoltán - Cihlář, Jaromír - Kleessen, S. - Zheng, H. - McCrow, J. P. - Hixson, K.K. - Araujo, W.L. - Nunes-Nesi, A. - Fernie, A. R. - Nikoloski, Z. - Palsson, B.O. - Allen, A. E.
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.
Nature Communications. Roč. 10, OCT 7 2019 (2019), č. článku 4552. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) EF16_019/0000759
Institutional support: RVO:60077344
Keywords : whole-cell response * phaeodactylum-tricornutum * transcription factor * nitrate * assimilation * sequences * proteins * proteome * reveals * genome
OECD category: Microbiology
Impact factor: 12.121, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41467-019-12407-y.pdf
Permanent Link: http://hdl.handle.net/11104/0305155 - 6.0518853 - BC 2020 RIV US eng J - Journal Article
Coale, T.H. - Moosburner, M. - Horák, Aleš - Oborník, Miroslav - Barbeau, K. A. - Allen, A. E.
Reduction-dependent siderophore assimilation in a model pennate diatom.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 116, č. 47 (2019), s. 23609-23617. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GA18-13458S; GA MŠMT(CZ) EF16_019/0000759
Institutional support: RVO:60077344
Keywords : iron-binding ligands * phaeodactylum-tricornutum * amphiphilic siderophores * thalassiosira-oceanica * ferric reductase * organic-ligands * marine * transport * pacific * acquisition * diatom * iron acquisition * ferric reductase * siderophore * phytoplankton
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 9.412, year: 2019
Method of publishing: Open access
https://www.pnas.org/content/pnas/116/47/23609.full.pdf
Permanent Link: http://hdl.handle.net/11104/0304032 - 7.0497580 - BC 2019 RIV US eng J - Journal Article
Brunson, John K. - McKinnie, Shaun M. K. - Chekan, Jonathan R. - McCrow, J. P. - Miles, Z.D. - Bertrand, E.M. - Bielinski, V.A. - Luhavaya, H. - Oborník, Miroslav - Smith, G.J. - Hutchins, D.A. - Allen, A. E. - Moore, B.S.
Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom.
Science. Roč. 361, č. 6409 (2018), s. 1356-1358. ISSN 0036-8075. E-ISSN 1095-9203
R&D Projects: GA ČR(CZ) GA18-13458S
Institutional support: RVO:60077344
Keywords : pseudo-nitzschia * algal blooms * kainic acid * toxicity * genome * mice
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 41.063, year: 2018
Permanent Link: http://hdl.handle.net/11104/0290225 - 8.0359538 - BC 2012 RIV GB eng J - Journal Article
Allen, A. E. - Dupont, Ch. L. - Oborník, Miroslav - Horák, Aleš - Nunes-Nesi, A. - McCrow, J. P. - Zheng, H. - Johnson, D. A. - Hu, H. - Fernie, A. R. - Bowler, Ch.
Evolution and metabolic significance of the urea cycle in photosynthetic diatoms.
Nature. Roč. 473, č. 7346 (2011), s. 203-209. ISSN 0028-0836. E-ISSN 1476-4687
R&D Projects: GA ČR GA206/08/1423
Institutional research plan: CEZ:AV0Z60220518
Keywords : CARBAMOYL-PHOSPHATE SYNTHETASE * PHAEODACTYLUM-TRICORNUTUM * MAXIMUM-LIKELIHOOD * PHYLOGENETIC RECONSTRUCTION * MOLECULAR EVOLUTION * SEQUENCE ALIGNMENT * DIVERGENCE TIMES * MARINE DIATOMS * MIXED MODELS * TREE
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 36.280, year: 2011
Permanent Link: http://hdl.handle.net/11104/0197312 - 9.0319081 - BC 2009 RIV GB eng J - Journal Article
Bowler, Ch. - Allen, A. E. - Badger, J. H. - Grimwood, J. - Jabbari, K. - Kuo, A. - Maheswari, U. - Martens, C. - Maumus, F. - Otillar, R. P. - Rayko, E. - Salamov, A. - Vandepoele, K. - Beszteri, B. - Gruber, A. - Heijde, M. - Katinka, M. - Mock, T. - Valentin, K. - Verret, F. - Berges, J. A. - Brownlee, C. - Cadoret, J.-P. - Chiovitti, A. - Choi, Ch. J. - Coesel, S. - De Martino, A. - Detter, J. Ch. - Durkin, C. - Falciatore, A. - Fournet, J. - Haruta, M. - Huysman, M. J. J. - Jenkins, B. D. - Jiroutová, Kateřina - Jorgensen, R. E. - Joubert, Y. - Kaplan, A. - Kröger, N. - Kroth, P. G. - La Roche, J. - Lindquist, E. - Lommer, M. - Martin–Jézéquel, V. - Lopez, P. J. - Lucas, S. - Mangogna, M. - McGinnis, K. - Medlin, L. K. - Montsant, A. - Oudot–Le Secq, M.-P. - Napoli, C. - Oborník, Miroslav - Schnitzler Parker, M. - Petit, J.-L. - Porcel, B. M. - Poulsen, N. - Robison, M. - Rychlewski, L. - Rynearson, T. A. - Schmutz, J. - Shapiro, H. - Siaut, M. - Stanley, M. - Sussman, M. R. - Taylor, A. R. - Vardi, A. - von Dassow, P. - Vyverman, W. - Willis, A. - Wyrwicz, L. S. - Rokhsar, D. S. - Weissenbach, J. - Armbrust, E. V. - Green, B. R. - Van de Peer, Y. - Grigoriev, I. V.
The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
[Genom rozsivky Phaeodactylum odkrývá evoluční historii genomů rozsivek.]
Nature. Roč. 456, 13-11-2008 (2008), s. 239-244. ISSN 0028-0836. E-ISSN 1476-4687
Institutional research plan: CEZ:AV0Z60220518
Keywords : Phaeodactylum * genome * evolution * diatom
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 31.434, year: 2008
Permanent Link: http://hdl.handle.net/11104/0168339 - 10.0104490 - PAU-O 20043068 RIV US eng J - Journal Article
Armbrust, E. V. - Berges, J. A. - Bowler, C. - Green, B. R. - Martinez, D. - Putnam, N. H. - Zhou, S. - Allen, A. E. - Apt, K. E. - Bechner, M. - Brzezinski, M. A. - Chaal, B. K. - Chiovitti, A. - Davis, A. K. - Demarest, M. S. - Detter, J. C. - Glavina, T. - Goodstein, D. - Hadi, M. Z. - Hellsten, U. - Hildebrand, M. - Jenkins, B. D. - Jurka, J. - Kapitonov, V. V. - Kröger, N. - Lau, W. W. Y. - Lane, T. W. - Larimer, F. W. - Lippmeier, J. C. - Lucas, S. - Medina, M. - Montsant, A. - Oborník, Miroslav - Schnitzler Parker, M. - Palenik, B. - Pazour, G. J. - Richardson, P. M. - Rynearson, T. A. - Saito, M. A. - Schwartz, D. C. - Thamatrakoln, K. - Valentin, K. - Vardi, A. - Wilkerson, F. P. - Rokhsar, D. S.
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.
[Genom rozsivky Thalassiosira pseudonana: ekologie, evoluce a metabolismus.]
Science. Roč. 306, č. 5693 (2004), s. 79-86. ISSN 0036-8075. E-ISSN 1095-9203
Institutional research plan: CEZ:AV0Z6022909
Keywords : diatom * genome * Thalassiosira
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 31.853, year: 2004
Permanent Link: http://hdl.handle.net/11104/0011756