Search results
- 1.0583620 - BFÚ 2024 RIV US eng J - Journal Article
Porubiakova, Otilia - Havlík, J. - Indu, Indu - Sedy, M. - Přepechalová, Veronika - Bartas, M. - Bidula, S. - Šťastný, J. - Fojta, Miroslav - Brázda, Václav
Variability of Inverted Repeats in All Available Genomes of Bacteria.
Microbiology Spectrum. Roč. 11, č. 4 (2023). ISSN 2165-0497. E-ISSN 2165-0497
R&D Projects: GA ČR(CZ) GA22-21903S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : dna-structure * sticky dna * sp-nov. * evolution * stability * binding * server * gene * rnas
OECD category: Microbiology
Impact factor: 3.7, year: 2022
Method of publishing: Open access
https://journals.asm.org/doi/epub/10.1128/spectrum.01648-23
Permanent Link: https://hdl.handle.net/11104/0351624 - 2.0574514 - BFÚ 2024 RIV NL eng J - Journal Article
Goswami, Pratik - Šislerová, Lucie - Dobrovolná, Michaela - Havlík, J. - Šťastný, J. - Brázda, Václav
Interaction of C-terminal p53 isoforms depends strongly upon DNA sequence and topology.
Biochimie. Roč. 208, MAY 2023 (2023), s. 93-99. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA ČR(CZ) GA22-21903S
Institutional support: RVO:68081707
Keywords : p53 isoforms * G-quadruplex * Atomic force microscopy * p53-DNA binding * Supercoiled DNA
OECD category: Biochemistry and molecular biology
Impact factor: 3.9, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0300908422003352?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0350064 - 3.0571535 - BFÚ 2024 RIV NL eng J - Journal Article
Havlík, J. - Brázda, Václav - Stanek, K. - Ježek, M. - Šťastný, J.
Feature-overlapper: The tool for DNA analysis overlap.
SOFTWARE IMPACTS. Roč. 16, MAY 2023 (2023), č. článku 100498. ISSN 2665-9638
Institutional support: RVO:68081707
Keywords : dna * R-loop * G-quadruplex * Annotation
OECD category: Cell biology
Impact factor: 2.1, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2665963823000350?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0349900 - 4.0555389 - BFÚ 2022 RIV CH eng J - Journal Article
Brázda, Václav - Havlík, J. - Kolomaznik, J. - Trenz, O. - Šťastný, J.
R-Loop Tracker: Web Access-Based Tool for R-Loop Detection and Analysis in Genomic DNA Sequences.
International Journal of Molecular Sciences. Roč. 22, č. 23 (2021), č. článku 12857. E-ISSN 1422-0067
Institutional support: RVO:68081707
Keywords : g-quadruplexes * transcription * repeats * triplex
OECD category: Biochemistry and molecular biology
Impact factor: 6.208, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1422-0067/22/23/12857
Permanent Link: http://hdl.handle.net/11104/0329907 - 5.0554894 - BFÚ 2022 RIV FR eng J - Journal Article
Bohalova, Natalia - Cantara, Alessio - Bartas, M. - Kaura, P. - Šťastný, J. - Pečinka, P. - Fojta, Miroslav - Mergny, Jean-Louis - Brázda, Václav
Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection.
Biochimie. Roč. 186, JUL 2021 (2021), s. 13-27. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : rna * replication * promoter * viruses * binding * zika * G-quadruplex
OECD category: Biochemistry and molecular biology
Impact factor: 4.372, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0300908421000961?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0329513 - 6.0542171 - BFÚ 2022 RIV CH eng J - Journal Article
Bohalova, Natalia - Cantara, Alessio - Bartas, M. - Kaura, P. - Šťastný, J. - Pečinka, P. - Fojta, Miroslav - Brázda, Václav
Tracing dsDNA Virus-Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences.
International Journal of Molecular Sciences. Roč. 22, č. 7 (2021), č. článku 3433. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : G-quadruplex * virus * bioinformatics * coevolution * host * dsDNA * G4Hunter
OECD category: Biochemistry and molecular biology
Impact factor: 6.208, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1422-0067/22/7/3433
Permanent Link: http://hdl.handle.net/11104/0319647 - 7.0539893 - BFÚ 2021 RIV GB eng J - Journal Article
Brázda, Václav - Kolomaznik, J. - Mergny, Jean-Louis - Šťastný, J.
G4Killer web application: a tool to design G-quadruplex mutations.
Bioinformatics. Roč. 36, č. 10 (2020), s. 3246-3247. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : G4Killer * web application * G-quadruplex mutations
OECD category: Biochemistry and molecular biology
Impact factor: 6.937, year: 2020
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article/36/10/3246/5716328
Permanent Link: http://hdl.handle.net/11104/0317588 - 8.0537727 - BFÚ 2021 RIV CH eng J - Journal Article
Brázda, Václav - Luo, Y. - Bartas, M. - Kaura, P. - Porubiakova, Otilia - Šťastný, J. - Pečinka, P. - Verga, D. - Da Cunha, V. - Takahashi, T. - Forterre, P. - Myllykallio, H. - Fojta, Miroslav - Mergny, Jean-Louis
G-Quadruplexes in the Archaea Domain.
Biomolecules. Roč. 10, č. 9 (2020), č. článku 1349. E-ISSN 2218-273X
R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : genome-wide * replication origins * inverted repeats * dna-structure * motifs * rna * radiodurans
OECD category: Biochemistry and molecular biology
Impact factor: 4.879, year: 2020
Method of publishing: Open access
http://apps.webofknowledge.com/InboundService.do?customersID=Alerting&mode=FullRecord&IsProductCode=Yes&product=WOS&Init=Yes&Func=Frame&DestFail=https%3A%2F%2Fwww.webofknowledge.com&action=retrieve&SrcApp=Alerting&SrcAuth=Alerting&SID=E4SFQpVfVUW1Pa8UB8d&UT=WOS%3A000580139600001
Permanent Link: http://hdl.handle.net/11104/0315583 - 9.0523977 - BFÚ 2021 RIV US eng J - Journal Article
Cutova, M. - Manta, J. - Porubiakova, O. - Kaura, P. - Šťastný, J. - Jagelská, Eva - Goswami, Pratik - Bartas, M. - Brázda, Václav
Divergent distributions of inverted repeats and G-quadruplex forming sequences in Saccharomyces cerevisiae.
Genomics. Roč. 112, č. 2 (2020), s. 1897-1901. ISSN 0888-7543. E-ISSN 1089-8646
R&D Projects: GA ČR(CZ) GA18-15548S
Institutional support: RVO:68081707
Keywords : web-based server * nucleic-acids * dna * binding * transcription
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 5.736, year: 2020
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0888754319305269?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0308301 - 10.0511796 - BFÚ 2020 RIV GB eng J - Journal Article
Brázda, Václav - Kolomaznik, J. - Lysek, J. - Bartas, Martin - Fojta, Miroslav - Šťastný, J. - Mergny, Jean-Louis
G4Hunter web application: a web server for G-quadruplex prediction.
Bioinformatics. Roč. 35, č. 18 (2019), s. 3493-3495. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : replication * motifs * rna * dna * sequence * reveals
OECD category: Biochemistry and molecular biology
Impact factor: 5.610, year: 2019
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article-pdf/35/18/3493/30024727/btz087.pdf
Permanent Link: http://hdl.handle.net/11104/0302044