Search results

  1. 1.
    0585153 - ÚOCHB 2025 RIV NL eng J - Journal Article
    Feidakis, C. P. - Křivák, Radoslav - Hoksza, D. - Novotný, M.
    AHoJ-DB: A PDB-wide Assignment of apo & holo Relationships Based on Individual Protein-Ligand Interactions.
    Journal of Molecular Biology. (2024), č. článku 168545. ISSN 0022-2836. E-ISSN 1089-8638
    R&D Projects: GA MŠMT(CZ) LM2018131
    Research Infrastructure: e-INFRA CZ II - 90254
    Institutional support: RVO:61388963
    Keywords : apo-holo * protein structure * ligands * binding sites * drug design
    Impact factor: 5.6, year: 2022
    Method of publishing: Limited access
    https://doi.org/10.1016/j.jmb.2024.168545
    Permanent Link: https://hdl.handle.net/11104/0352895
     
     
  2. 2.
    0582851 - ÚOCHB 2025 RIV CH eng J - Journal Article
    Matoušková, Zuzana - Orsághová, Katarína - Srb, Pavel - Pytelková, Jana - Kukačka, Zdeněk - Buša, Michal - Hajdušek, Ondřej - Šíma, Radek - Fábry, Milan - Novák, Petr - Horn, Martin - Kopáček, Petr - Mareš, Michael
    An Unusual Two-Domain Thyropin from Tick Saliva: NMR Solution Structure and Highly Selective Inhibition of Cysteine Cathepsins Modulated by Glycosaminoglycans.
    International Journal of Molecular Sciences. Roč. 25, č. 4 (2024), č. článku 2240. ISSN 1661-6596
    R&D Projects: GA ČR(CZ) GA21-08826S; GA ČR(CZ) GA22-27695S; GA MŠMT(CZ) EF16_019/0000759; GA ČR(CZ) GA22-30920S; GA MŠMT(CZ) LUC23037
    Institutional support: RVO:61388963 ; RVO:61388971 ; RVO:60077344
    Keywords : cathepsin * cysteine protease * tick * parasite * saliva * thyropin * protease inhibitor * protein structure
    Impact factor: 5.6, year: 2022
    Method of publishing: Open access
    https://doi.org/10.3390/ijms25042240
    Permanent Link: https://hdl.handle.net/11104/0350903
     
     
  3. 3.
    0580493 - BC 2024 RIV CH eng J - Journal Article
    Martins, Larissa Almeida - Buša, Michal - Chlastáková, A. - Kotál, Jan - Beránková, Z. - Stergiou, N. - Jmel, Mohamed Amine - Schmitt, E. - Chmelař, J. - Mareš, Michael - Kotsyfakis, Michalis
    Protease-bound structure of Ricistatin provides insights into the mechanism of action of tick salivary cystatins in the vertebrate host.
    Cellular and Molecular Life Sciences. Roč. 80, č. 11 (2023), č. článku 339. ISSN 1420-682X. E-ISSN 1420-9071
    R&D Projects: GA ČR(CZ) GA19-07247S; GA MŠMT(CZ) EF16_019/0000759; GA MŠMT(CZ) EF16_019/0000729; GA MŠMT(CZ) LTAUSA19109
    Institutional support: RVO:60077344 ; RVO:61388963
    Keywords : ray crystal-structure * sialostatin-l * functional expression * cysteine cathepsins * mammalian legumain * ixodes-scapularis * inhibitors * stefin * generation * peptidase * Ixodes ricinus * Tick saliva * Cystatins * Protease inhibition * Protein structure * Host-parasite interactions
    OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (UOCHB-X)
    Impact factor: 8, year: 2022
    Method of publishing: Limited access
    https://link.springer.com/article/10.1007/s00018-023-04993-4
    Permanent Link: https://hdl.handle.net/11104/0349268
     
     
  4. 4.
    0580418 - MBÚ 2024 RIV US eng M - Monography Chapter
    Kalaninová, Zuzana - Fojtík, Lukáš - Chmelík, Josef - Novák, Petr - Volný, Michael - Man, Petr
    Probing Antibody Structures by Hydrogen/Deuterium Exchange Mass Spectrometry.
    Mass Spectrometry-Based Proteomics. New York: Humana, 2023 - (Gevaert, K.), s. 303-334. Methods in Molecular Biology. ISBN 978-1-0716-3456-1
    R&D Projects: GA ČR(CZ) GA22-27695S; GA MŠMT(CZ) ED1.1.00/02.0109
    EU Projects: European Commission(XE) 823839 - EPIC-XS
    Institutional support: RVO:61388971
    Keywords : Antibody * Hydrogen/deuterium exchange * Mass spectrometry * Proteolysis * Protein structure and dynamics * Biosimilars
    OECD category: Biochemistry and molecular biology
    https://link.springer.com/protocol/10.1007/978-1-0716-3457-8_17
    Permanent Link: https://hdl.handle.net/11104/0349200
     
     
  5. 5.
    0574113 - ÚOCHB 2024 RIV GB eng J - Journal Article
    Koudelková, Lenka - Pelantová, M. - Brůhová, Z. - Sztacho, M. - Pavlík, V. - Pánek, D. - Gemperle, J. - Talacko, P. - Brábek, J. - Rösel, D.
    Phosphorylation of tyrosine 90 in SH3 domain is a new regulatory switch controlling Src kinase.
    eLife. Roč. 12, July (2023), č. článku e82428. ISSN 2050-084X. E-ISSN 2050-084X
    R&D Projects: GA MŠMT LX22NPO5102
    Research Infrastructure: Czech-BioImaging II - 90129
    Institutional support: RVO:61388963
    Keywords : biochemistry * cell biology * cell transformation * chemical biology * invasiveness * mouse * phosphorylation * protein structure * SH3 domain * Src
    OECD category: Biochemistry and molecular biology
    Impact factor: 7.7, year: 2022
    Method of publishing: Open access
    https://doi.org/10.7554/eLife.82428
    Permanent Link: https://hdl.handle.net/11104/0344468
    FileDownloadSizeCommentaryVersionAccess
    10.7554eLife.82428.pdf03 MBPublisher’s postprintopen-access
     
     
  6. 6.
    0573702 - MBÚ 2024 RIV DE eng J - Journal Article
    Mori, T. - Sun, X. - Kadlčík, Stanislav - Janata, Jiří - Abe, I.
    Structure-Function Analysis of the S-Glycosylation Reaction in the Biosynthesis of Lincosamide Antibiotics.
    Angewandte Chemie - International Edition. Roč. 62, č. 29 (2023), č. článku e2023049. ISSN 1433-7851. E-ISSN 1521-3773
    R&D Projects: GA ČR(CZ) GJ20-09811Y; GA MŠMT(CZ) LX22NPO5103
    Grant - others:AV ČR(CZ) LQ200202002
    Program: Prémie Lumina quaeruntur
    Institutional support: RVO:61388971
    Keywords : LmbT * S-glycosyltransferase * lincomycin * ergothioneine * protein structure
    OECD category: Microbiology
    Impact factor: 16.6, year: 2022
    Method of publishing: Open access
    https://onlinelibrary.wiley.com/doi/10.1002/anie.202304989
    Permanent Link: https://hdl.handle.net/11104/0344076
    FileDownloadSizeCommentaryVersionAccess
    Mori - Structure‐Function Analysis of the S‐Glycosylation Reaction in the Biosynthesis of.pdf13.9 MBPublisher’s postprintopen-access
     
     
  7. 7.
    0571673 - MBÚ 2024 RIV GB eng J - Journal Article
    Pacheco-Garcia, J. L. - Anoz-Carbonell, E. - Loginov, Dmitry Sergej - Kavan, Daniel - Salido, E. - Man, Petr - Medina, M. - Pey, A. L.
    Counterintuitive structural and functional effects due to naturally occurring mutations targeting the active site of the disease-associated NQO1 enzyme.
    FEBS Journal. Roč. 290, č. 7 (2023), s. 1855-1873. ISSN 1742-464X. E-ISSN 1742-4658
    R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
    EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
    Research Infrastructure: CIISB II - 90127
    Institutional support: RVO:61388971
    Keywords : catalytic mechanism * genotype-phenotype correlations * protein structure-function * structural stability
    OECD category: Biochemistry and molecular biology
    Impact factor: 5.4, year: 2022
    Method of publishing: Open access
    https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16677
    Permanent Link: https://hdl.handle.net/11104/0343503
     
     
  8. 8.
    0571080 - ÚOCHB 2024 RIV GB eng J - Journal Article
    Voitsitskyi, T. - Stratiichuk, R. - Koleiev, I. - Popryho, L. - Ostrovsky, Z. - Henitsoi, P. - Khropachov, I. - Vozniak, V. - Zhytar, R. - Nechepurenko, D. - Yesylevskyy, Semen - Nafiiev, A. - Starosyla, S.
    3DProtDTA: a deep learning model for drug-target affinity prediction based on residue-level protein graphs.
    RSC Advances. Roč. 13, č. 15 (2023), s. 10261-10272. E-ISSN 2046-2069
    Institutional support: RVO:61388963
    Keywords : drug-target affinity prediction * protein structure
    OECD category: Physical chemistry
    Impact factor: 3.9, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1039/D3RA00281K
    Permanent Link: https://hdl.handle.net/11104/0342384
     

    Research data: GitHub
     
  9. 9.
    0570585 - ÚOCHB 2024 RIV US eng J - Journal Article
    Buša, Michal - Matoušková, Zuzana - Bartošová-Sojková, Pavla - Pachl, Petr - Řezáčová, Pavlína - Eichenberger, R. M. - Deplazes, P. - Horn, Martin - Štefanić, S. - Mareš, Michael
    An evolutionary molecular adaptation of an unusual stefin from the liver fluke Fasciola hepatica redefines the cystatin superfamily.
    Journal of Biological Chemistry. Roč. 299, č. 3 (2023), č. článku 102970. ISSN 0021-9258. E-ISSN 1083-351X
    R&D Projects: GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GA19-17269S; GA ČR(CZ) GA21-16565S; GA MŠMT(CZ) LTAUSA19109
    Institutional support: RVO:61388963 ; RVO:60077344
    Keywords : cystatin * stefin * protease inhibitor * cysteine cathepsin * protein structure * protein evolution * helminth parasite
    OECD category: Biochemistry and molecular biology
    Impact factor: 4.8, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1016/j.jbc.2023.102970
    Permanent Link: https://hdl.handle.net/11104/0341888
     

    Research data: RCSB PDB
     
  10. 10.
    0562671 - BC 2023 RIV CH eng J - Journal Article
    Alama-Bermejo, Gema - Bartošová-Sojková, Pavla - Atkinson, S.D. - Holzer, Astrid S. - Bartholomew, J.L.
    Proteases as Therapeutic Targets Against the Parasitic Cnidarian Ceratonova shasta: Characterization of Molecules Key to Parasite Virulence In Salmonid Hosts.
    Frontiers in Cellular and Infection Microbiology. Roč. 11, JAN 7 2022 (2022), č. článku 804864. ISSN 2235-2988. E-ISSN 2235-2988
    R&D Projects: GA ČR(CZ) GX19-28399X; GA MŠMT(CZ) LTAUSA17201; GA ČR(CZ) GA21-16565S
    Institutional support: RVO:60077344
    Keywords : myxozoa * cysteine protease * aspartic protease * aminopeptidase * stefin * 3D protein structure * gene expression * homologous search
    OECD category: Biochemistry and molecular biology
    Impact factor: 5.7, year: 2022
    Method of publishing: Open access
    https://www.frontiersin.org/articles/10.3389/fcimb.2021.804864/full
    Permanent Link: https://hdl.handle.net/11104/0335956
     
     

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