Search results
- 1.0576215 - BÚ 2024 RIV GB eng J - Journal Article
Belyayev, Alexander - Kalendar, R. - Josefiová, Jiřina - Paštová, Ladislava - Habibi, Farzaneh - Mahelka, Václav - Mandák, Bohumil - Krak, Karol
Telomere sequence variability in genotypes from natural plant populations: unusual block-organized double-monomer terminal telomeric arrays.
BMC Genomics. Roč. 24, September (2023), č. článku 572. ISSN 1471-2164. E-ISSN 1471-2164
R&D Projects: GA ČR GA20-20286S
Institutional support: RVO:67985939
Keywords : evolution * Oxford nanopore sequencing * telomere
OECD category: Plant sciences, botany
Impact factor: 4.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s12864-023-09657-y
Permanent Link: https://hdl.handle.net/11104/0348547 - 2.0575986 - FZÚ 2024 RIV GB eng J - Journal Article
Alberti, S. - Schmidt, S. - Hageneder, S. - Angelome, P.C. - Soler-lllia, G.J.A.A. - Vana, P. - Dostálek, Jakub - Azzaroni, O. - Knoll, W.
Large-pore mesoporous silica: template design, thin film preparation and biomolecule infiltration.
Materials Chemistry Frontiers. Roč. 7, č. 18 (2023), s. 4142-4151. E-ISSN 2052-1537
Institutional support: RVO:68378271
Keywords : nanopore * infiltration * optical waveguide spectroscopy * protein
OECD category: Biophysics
Impact factor: 7, year: 2022
Method of publishing: Open access
Permanent Link: https://hdl.handle.net/11104/0346099File Download Size Commentary Version Access 0575986.pdf 0 1.2 MB CC licence Publisher’s postprint open-access - 3.0561822 - ÚEB 2023 RIV US eng J - Journal Article
Navrátilová, Pavla - Toegelová, Helena - Tulpová, Zuzana - Kuo, Y. T. - Stein, N. - Doležel, Jaroslav - Houben, A. - Šimková, Hana - Mascher, M.
Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.
Plant Biotechnology Journal. Roč. 20, č. 7 (2022), s. 1373-1386. ISSN 1467-7644. E-ISSN 1467-7652
R&D Projects: GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131; GA ČR(CZ) GA17-17564S; GA ČR(CZ) GC18-14450J
Institutional support: RVO:61389030
Keywords : CenH3 * Cereba * ChIP-seq * flow cytometry * nanopore * PacBio HiFi reads * ribosomal DNA * satellite * telomeric repeats
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 13.8, year: 2022
Method of publishing: Open access
https://doi.org/10.1111/pbi.13816
Permanent Link: https://hdl.handle.net/11104/0334316File Download Size Commentary Version Access 2022_Navratilova_Plant Biotechnology Journal_1373.pdf 1 3.9 MB Other open-access - 4.0560490 - BC 2023 RIV GB eng J - Journal Article
Novosolov, M. - Yahalomi, D. - Chang, E.S. - Fiala, Ivan - Cartwright, P. - Huchon, D.
The Phylogenetic Position of the Enigmatic, Polypodium hydriforme (Cnidaria, Polypodiozoa): Insights from Mitochondrial Genomes.
Genome Biology and Evolution. Roč. 14, č. 8 (2022), č. článku evac112. ISSN 1759-6653. E-ISSN 1759-6653
R&D Projects: GA ČR(CZ) GA21-29370S
Institutional support: RVO:60077344
Keywords : Cnidaria * Myxozoa * mtDNA * Oxford Nanopore Technologies * Endocnidozoa * tRNA loss
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 3.3, year: 2022
Method of publishing: Open access
https://dx.doi.org/10.1093/gbe/evac112
Permanent Link: https://hdl.handle.net/11104/0340166 - 5.0556828 - MBÚ 2023 RIV CH eng J - Journal Article
Firrincieli, A. - Grigoriev, B. - Dostálová, Hana - Cappelletti, M.
The Complete Genome Sequence and Structure of the Oleaginous Rhodococcus opacus Strain PD630 Through Nanopore Technology.
Frontiers in Bioengineering and Biotechnology. Roč. 9, FEB 17 (2022), č. článku 810571. ISSN 2296-4185. E-ISSN 2296-4185
Institutional support: RVO:61388971
Keywords : stress * Rhodococcus opacus PD630 * nanopore sequencing * oleaginous bacteria * complete genome * Rhodococcus genomics * Rhodococcus opacus plasmids * xenobiotic degradation genes * lipid metabolism genes
OECD category: Microbiology
Impact factor: 5.7, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fbioe.2021.810571/full
Permanent Link: http://hdl.handle.net/11104/0331261 - 6.0555017 - ÚMG 2022 RIV GB eng J - Journal Article
Lopez-Echartea, E. - Šuman, J. - Šmrhová, T. - Rídl, Jakub - Pajer, P. - Strejček, M. - Uhlík, O.
Genomic analysis of dibenzofuran-degrading Pseudomonas veronii strain Pvy reveals its biodegradative versatility.
G3-Genes, Genomes, Genetics. Roč. 11, č. 2 (2021), č. článku jkaa030. ISSN 2160-1836. E-ISSN 2160-1836
R&D Projects: GA MŠMT(CZ) LM2015047
Research Infrastructure: ELIXIR-CZ - 90047
Institutional support: RVO:68378050
Keywords : Pseudomonas veronii strain Pvy * biodegradation * dioxygenase * dibenzofuran * whole-genome sequencing * nanopore technology * denitrification * organic phosphate mineralization * heavy-metal tolerance
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.542, year: 2021
Method of publishing: Open access
https://academic.oup.com/g3journal/article/11/2/jkaa030/6029021?login=false
Permanent Link: http://hdl.handle.net/11104/0329634 - 7.0548344 - BC 2022 RIV SE eng J - Journal Article
Vondrak, Tihana - Oliveira, Ludmila - Novák, Petr - Koblížková, Andrea - Neumann, Pavel - Macas, Jiří
Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads.
Computational and Structural Biotechnology Journal. Roč. 19, Apr 22 (2021), s. 2179-2189. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Research Infrastructure: ELIXIR-CZ II - 90131
Institutional support: RVO:60077344
Keywords : Satellite DNA * Heterochromatin * Oxford Nanopore sequencing * Fluorescence in situ hybridization * Holocentric chromosomes * LINE elements
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 6.155, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037021001227?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0329092 - 8.0543446 - ÚMG 2022 RIV US eng J - Journal Article
Gewartowska, O. - Aranaz Novalichez, Goretti - Krawczyk, P.S. - Mroczek, S. - Kusio-Kobialka, M. - Tarkowski, B. - Špoutil, František - Benada, Oldřich - Kofroňová, Olga - Szwedziak, P. - Cysewski, D. - Gruchota, J. - Szpila, M. - Chlebowski, A. - Sedláček, Radislav - Procházka, Jan - Dziembowski, A.
Cytoplasmic polyadenylation by TENT5A is required for proper bone formation.
Cell Reports. Roč. 35, č. 3 (2021), č. článku 109015. ISSN 2211-1247. E-ISSN 2211-1247
R&D Projects: GA MŠMT(CZ) LM2015040; GA MŠMT(CZ) LM2018126; GA MŠMT EF16_013/0001789; GA MŠMT ED2.1.00/19.0395; GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR GJ19-19025Y
Institutional support: RVO:68378050 ; RVO:61388971
Keywords : FAM46A * Nanopore * TENT5A * collagen * direct RNA sequencing * osteoblasts * osteogenesis * osteogenesis imperfecta * poly(A) tail * polyadenylation
OECD category: Cell biology; Cell biology (MBU-M)
Impact factor: 9.995, year: 2021
Method of publishing: Limited access
https://www.cell.com/cell-reports/fulltext/S2211-1247(21)00329-6?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124721003296%3Fshowall%3Dtrue
Permanent Link: http://hdl.handle.net/11104/0320651 - 9.0537188 - FZÚ 2021 RIV DE eng J - Journal Article
Hu, F. - Angelov, Borislav - Li, S. - Li, N. - Lin, X. - Zou, A.
Single-molecule study of peptides with the same amino acid composition but different sequences by using an aerolysin nanopore.
Chembiochem. Roč. 21, č. 17 (2020), s. 2467-2473. ISSN 1439-4227. E-ISSN 1439-7633
Institutional support: RVO:68378271
Keywords : aerolysin nanopore * single-molecule detection * model peptides * folding * hydrogen bond
OECD category: Physical chemistry
Impact factor: 3.164, year: 2020
Method of publishing: Limited access
https://doi.org/10.1002/cbic.202000119
Permanent Link: http://hdl.handle.net/11104/0314931 - 10.0536551 - ÚJF 2021 RIV CH eng J - Journal Article
Cruz-Garcia, L. - O'Brien, G. - Sipos, B. - Mayes, S. - Tichý, A. - Širák, I. - Davídková, Marie - Marková, M. - Turner, D. J. - Badie, C.
In Vivo Validation of Alternative FDXR Transcripts in Human Blood in Response to Ionizing Radiation.
International Journal of Molecular Sciences. Roč. 21, č. 21 (2020), č. článku 7851. E-ISSN 1422-0067
Institutional support: RVO:61389005
Keywords : nanopore sequencing * biodosimetry * FDXR * alternative transcript * splice variants * ionizing radiation * qPCR * gene expression
OECD category: Biophysics
Impact factor: 5.924, year: 2020
Method of publishing: Open access
https://doi.org/10.3390/ijms21217851
Permanent Link: http://hdl.handle.net/11104/0314319File Download Size Commentary Version Access 0536551.pdf 0 2.3 MB Open Access - CC licence Publisher’s postprint open-access