Search results
- 1.0586162 - MBÚ 2025 RIV GB eng J - Journal Article
Rocha, U. - Kasmanas, J. C. - Kallies, R. - Saraiva, J. P. - Toscan, R. B. - Stefanic, P. - Bicalho, M. F. - Correa, F. B. - Bastuerk, M. N. - Fousekis, E. - Barbosa, L. M. V. - Plewka, J. - Probst, A. J. - Baldrian, Petr - Stadler, P. f.
MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.
Molecular Ecology Resources. Roč. 24, č. 2 (2024), č. článku 13904. ISSN 1755-098X. E-ISSN 1755-0998
Institutional support: RVO:61388971
Keywords : microbial genomes * metabolism * assembler * coverage * phage * genome reconstruction * metagenome-assembled genomes * metagenomics * multi-domain * uncultivated viral genomes
OECD category: Microbiology
Impact factor: 7.7, year: 2022
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.13904
Permanent Link: https://hdl.handle.net/11104/0353749 - 2.0585809 - MBÚ 2025 RIV NL eng J - Journal Article
Garrastatxu, J. - Odriozola Larranga, Inaki - Esteban, R. - Encinas-Valero, M. - Morais, D. K. - Větrovský, Tomáš - Yuste, J. C.
Fungal symbionts associate with holm oak tree health in declining oak savannas of the southwest of the Iberian Peninsula.
Applied Soil Ecology. Roč. 195, March 24 (2024), č. článku 105210. ISSN 0929-1393. E-ISSN 1873-0272
EU Projects: European Commission H2020-SFS-2020-2 - HoliSoils
Institutional support: RVO:61388971
Keywords : phytophthora-cinnamomi * community * berthelot * diversity * dynamics * ammonia * 1st * Microbial diversity * Microbial ecology * Plant-microbial interactions * Metagenomics * Microbial genetics * Tree health
OECD category: Microbiology
Impact factor: 4.8, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0929139323004080?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0353600 - 3.0580396 - MBÚ 2024 RIV US eng M - Monography Chapter
Štursová, Martina - López-Mondejár, Rubén - Baldrian, Petr
Investigating the Bacterial and Fungal Communities Involved in Dead Biomass Degradation in Forest Soils.
Microbial Environmental Genomics (MEG). New York: Humana, 2023 - (Martin, F.; Uroz, S.), s. 157-168. Methods in Molecular Biology. ISBN 978-1-0716-2870-6
R&D Projects: GA ČR(CZ) GA20-14961S; GA ČR(CZ) GA22-30769S
Institutional support: RVO:61388971
Keywords : Stable isotope probing * Microbial communities * Soil ecology * Organic matter decomposition * Metagenomics * metatranscriptomics
OECD category: Microbiology
Permanent Link: https://hdl.handle.net/11104/0349169 - 4.0578330 - MBÚ 2024 RIV CH eng J - Journal Article
Němečková, K. - Mareš, Jan - Procházková, L. - Culka, A. - Košek, F. - Wierzchos, J. - Nedbalová, L. - Dudák, J. - Tymlová, V. - Žemlička, J. - Kust, A. - Zima, J. - Nováková, E. - Jehlička, J.
Gypsum endolithic phototrophs under moderate climate (Southern Sicily): their diversity and pigment composition.
Frontiers in Microbiology. Roč. 14, July 6 (2023), č. článku 1175066. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA MŠMT(CZ) LO1416; GA MŠMT(CZ) ED2.1.00/19.0392
Institutional support: RVO:61388971
Keywords : mcmurdo dry valleys * raman-spectroscopy * microbial colonization * atacama desert * in-situ * scytonemin * microorganisms * cyanobacteria * carotenoids * communities * endoliths * gypsum * phototrophs * cyanobacteria * green algae * metagenomics
OECD category: Microbiology
Impact factor: 5.2, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2023.1175066/full
Permanent Link: https://hdl.handle.net/11104/0347341 - 5.0577005 - MBÚ 2024 RIV GB eng J - Journal Article
Le, A. V. - Větrovský, Tomáš - Baručić, D. - Saraiva, J. P. - Dobbler, Priscila Thiago - Kohout, Petr - Pospíšek, M. - da Rocha, U. N. - Kléma, J. - Baldrian, Petr
Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns.
Molecular Ecology Resources. Roč. 23, č. 8 (2023), s. 1800-1811. ISSN 1755-098X. E-ISSN 1755-0998
R&D Projects: GA ČR(CZ) GA21-17749S
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388971
Keywords : artificial intelligence * eukaryote * fungi * gene prediction * intron * metagenomics
OECD category: Microbiology
Impact factor: 7.7, year: 2022
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.13852
Permanent Link: https://hdl.handle.net/11104/0347997 - 6.0576258 - BC 2024 RIV US eng M - Monography Chapter
Jameson, E. - Taubert, M. - Angel, Roey - Coyotzi, S. - Chen, Y. - Eyice, Ö. - Schäfer, H. - Murrell, J.C. - Neufeld, J.D. - Dumont, M.G.
DNA-, RNA-, and protein-based stable-isotope probing for high-throughput biomarker analysis of active microorganisms.
Metagenomics: Methods and Protocols, Methods in Molecular Biology. New York: Humana, 2023 - (Streit, W.; Daniel, R.), Roč. 2555 (2023), s. 261-282. ISBN 978-1-0716-2794-5
Institutional support: RVO:60077344
Keywords : DNA * metagenomics * metatranscriptomics * protein * proteomics * RNA * Stable-isotope probing
OECD category: Microbiology
Permanent Link: https://hdl.handle.net/11104/0345837 - 7.0576020 - MBÚ 2024 RIV US eng J - Journal Article
Lebre, P. H. H. - Bosch, Jason - Coclet, C. - Hallas, R. - Hogg, I. D. D. - Johnson, J. - Moon, K. L. L. - Ortiz, M. - Rotimi, A. - Stevens, M. I. I. - Varliero, G. - Convey, P. - Vikram, S. - Chown, S. L. L. - Cowan, D. A. A.
Expanding Antarctic biogeography: microbial ecology of Antarctic island soils.
Ecography. Roč. 2023, č. 9 (2023), č. článku e06568. ISSN 0906-7590. E-ISSN 1600-0587
Institutional support: RVO:61388971
Keywords : Antarctic conservation biogeographic regions (ACBRs) * Antarctic ecology * functional metagenomics * microbial ecology * sub-Antarctic islands
OECD category: Microbiology
Impact factor: 5.9, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/epdf/10.1111/ecog.06568
Permanent Link: https://hdl.handle.net/11104/0345765 - 8.0573085 - MBÚ 2024 RIV GB eng J - Journal Article
Saraiva, J. P. - Bartholomaeus, A. - Toscan, R. B. - Baldrian, Petr - Nunes da Rocha, U.
Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes.
Molecular Ecology Resources. Roč. 23, č. 5 (2023), s. 1066-1076. ISSN 1755-098X. E-ISSN 1755-0998
Institutional support: RVO:61388971
Keywords : eukaryotes * genome-resolved metagenomics * Hypocreales * Mamiellales * Saccharomycetales
OECD category: Microbiology
Impact factor: 7.7, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.13776
Permanent Link: https://hdl.handle.net/11104/0343689 - 9.0563703 - BC 2023 RIV GB eng J - Journal Article
Bulzu, Paul-Adrian - Kavagutti, Vinicius Silva - Andrei, A.S. - Ghai, Rohit
The evolutionary kaleidoscope of Rhodopsins.
mSystems. Roč. 7, č. 5 (2022), č. článku 00405-22. ISSN 2379-5077. E-ISSN 2379-5077
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23261S; GA ČR(CZ) GA21-21990S
Institutional support: RVO:60077344
Keywords : rhodopsins * Alt-rhodopsins * AltRs * heliorhodopsins * optogenetics * metagenomics
OECD category: Microbiology
Impact factor: 6.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1128/msystems.00405-22
Permanent Link: https://hdl.handle.net/11104/0340369 - 10.0562728 - MBÚ 2023 RIV GB eng J - Journal Article
Siles, J. A. - Starke, Robert - Martinović, Tijana - Fernandes, Maysa Lima Parente - Orgiazzi, A. - Bastida, F.
Distribution of phosphorus cycling genes across land uses and microbial taxonomic groups based on metagenome and genome mining.
Soil Biology and Biochemistry. Roč. 174, November 2022 (2022), č. článku 108826. ISSN 0038-0717
Institutional support: RVO:61388971
Keywords : Phosphorus cycling * Microbial genes * Land use * Microbial functionality * Genome mining * Metagenomics
OECD category: Microbiology
Impact factor: 9.7, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0038071722002838?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0335222