Search results
- 1.0583841 - FGÚ 2025 RIV CH eng J - Journal Article
Čajka, Tomáš - Hricko, Jiří - Rakušanová, Stanislava - Brejchová, Kristýna - Nováková, Michaela - Rudl Kulhavá, Lucie - Holá, Veronika - Paučová, Michaela - Fiehn, O. - Kuda, Ondřej
Hydrophilic Interaction Liquid Chromatography–Hydrogen/Deuterium Exchange–Mass Spectrometry (HILIC-HDX-MS) for Untargeted Metabolomics.
International Journal of Molecular Sciences. Roč. 25, č. 5 (2024), č. článku 2899. ISSN 1661-6596
R&D Projects: GA MŠMT(CZ) LX22NPO5104; GA ČR(CZ) GA20-21114S; GA ČR(CZ) GA21-00477S
Research Infrastructure: e-INFRA CZ II - 90254
Institutional support: RVO:67985823
Keywords : metabolomics * liquid chromatography * mass spectrometry * hydrogen/deuterium exchange * unknown identification
OECD category: Analytical chemistry
Impact factor: 5.6, year: 2022
Method of publishing: Open access
https://www.mdpi.com/1422-0067/25/5/2899
Permanent Link: https://hdl.handle.net/11104/0351844File Download Size Commentary Version Access 24_0026_0583841.pdf 4 849.4 KB Publisher’s postprint open-access - 2.0581603 - MBÚ 2024 RIV US eng J - Journal Article
Lambert, T. - Gramlich, M. - Stutzke, L. - Smith, L. - Deng, D. - Kaiser, Philipp D. - Rothbauer, U. - Benesch, J. L. P. - Wagner, C. - Koenig, M. - Pompach, Petr - Novák, Petr - Zeck, A. - Rand, K. D.
Development of a PNGase Rc Column for Online Deglycosylation of Complex Glycoproteins during HDX-MS.
Journal of the American Society for Mass Spectrometry. Roč. 34, č. 11 (2023), s. 2556-2566. ISSN 1044-0305. E-ISSN 1879-1123
R&D Projects: GA MŠMT LM2023042; GA MŠMT(CZ) EF18_046/0015974
Research Infrastructure: CIISB III - 90242
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : hydrogen/deuterium exchange * resolution * proteins
OECD category: Biochemistry and molecular biology
Impact factor: 3.2, year: 2022
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/jasms.3c00268
Permanent Link: https://hdl.handle.net/11104/0349703 - 3.0580418 - MBÚ 2024 RIV US eng M - Monography Chapter
Kalaninová, Zuzana - Fojtík, Lukáš - Chmelík, Josef - Novák, Petr - Volný, Michael - Man, Petr
Probing Antibody Structures by Hydrogen/Deuterium Exchange Mass Spectrometry.
Mass Spectrometry-Based Proteomics. New York: Humana, 2023 - (Gevaert, K.), s. 303-334. Methods in Molecular Biology. ISBN 978-1-0716-3456-1
R&D Projects: GA ČR(CZ) GA22-27695S; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 823839 - EPIC-XS
Institutional support: RVO:61388971
Keywords : Antibody * Hydrogen/deuterium exchange * Mass spectrometry * Proteolysis * Protein structure and dynamics * Biosimilars
OECD category: Biochemistry and molecular biology
https://link.springer.com/protocol/10.1007/978-1-0716-3457-8_17
Permanent Link: https://hdl.handle.net/11104/0349200 - 4.0580389 - MBÚ 2024 RIV US eng M - Monography Chapter
Vávra, J. - Sergunin, A. - Stráňava, M. - Kádek, Alan - Shimitzu, T. - Man, Petr - Martínková, M.
Hydrogen/Deuterium Exchange Mass Spectrometry of Heme-Based Oxygen Sensor Proteins.
Oxygen Sensing. Methods and Protocols.. New York: Humana, 2023 - (Weinert, E.), s. 99-122. ISBN 978-1-0716-3079-2
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:61388971
Keywords : Hydrogen/deuterium exchange * Mass spectrometry * Protein conformational dynamics * Ligand binding * Signal transduction * Globin-coupled histidine kinase * Heme-containing oxygen sensors
OECD category: Biochemical research methods
https://link.springer.com/protocol/10.1007/978-1-0716-3080-8_8
Permanent Link: https://hdl.handle.net/11104/0349167 - 5.0576929 - FGÚ 2024 RIV US eng J - Journal Article
Petrvalská, Olivia - Honzejková, K. - Koupilová, N. - Herman, P. - Obšilová, Veronika - Obšil, Tomáš
14-3-3 protein inhibits CaMKK1 by blocking the kinase active site with its last two C-terminal helices.
Protein Science. Roč. 32, č. 11 (2023), č. článku e4805. ISSN 0961-8368. E-ISSN 1469-896X
R&D Projects: GA ČR(CZ) GA19-00121S
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:67985823
Keywords : 14-3-3 proteins * calcium/calmodulin-dependent protein kinase * CaMKK * fluorescence spectroscopy * hydrogen/deuterium exchange coupled to MS * protein–protein interaction * SAXS
OECD category: Biochemistry and molecular biology
Impact factor: 8, year: 2022
Method of publishing: Open access
https://doi.org/10.1002/pro.4805
Permanent Link: https://hdl.handle.net/11104/0346310 - 6.0573968 - MBÚ 2024 RIV NL eng J - Journal Article
Osičková, Adriana - Knoblochová, Šárka - Bumba, Ladislav - Man, Petr - Kalaninová, Zuzana - Lepesheva, Anna - Jurnečka, David - Čížková, Monika - Biedermannová, Lada - Goldsmith, J. A. - Maynard, J. A. - McLellan, J. S. - Osička, Radim - Šebo, Peter - Mašín, Jiří
A conserved tryptophan in the acylated segment of RTX toxins controls their βinf2/inf integrin–independent cell penetration.
Journal of Biological Chemistry. Roč. 299, č. 8 (2023), č. článku 104978. ISSN 0021-9258. E-ISSN 1083-351X
R&D Projects: GA ČR(CZ) GA22-01558S; GA ČR(CZ) GA22-01558S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT(CZ) EF18_046/0015974; GA ČR(CZ) GX19-27630X
Research Infrastructure: e-INFRA CZ - 90140; EATRIS-CZ IV - 90253; CIISB III - 90242
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : acylated segment * adenylate cyclase toxin * cytotoxicity * hydrogen/deuterium exchange * RTX toxin * thermal stability * tryptophan residue * α-hemolysin * β integrins 2
OECD category: Microbiology
Impact factor: 4.8, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0021925823020069?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0344352 - 7.0559233 - ÚOCHB 2023 RIV US eng J - Journal Article
Chaturvedi, Ritu - Webb, I. K.
Multiplexed Conformationally Selective, Localized Gas-Phase Hydrogen Deuterium Exchange of Protein Ions Enabled by Transmission-Mode Electron Capture Dissociation.
Analytical Chemistry. Roč. 94, č. 25 (2022), s. 8975-8982. ISSN 0003-2700. E-ISSN 1520-6882
Institutional support: RVO:61388963
Keywords : mobility-mass spectrometry * H/D exchange * hydrogen/deuterium exchange
OECD category: Analytical chemistry
Impact factor: 7.4, year: 2022
Method of publishing: Limited access
https://doi.org/10.1021/acs.analchem.2c00942
Permanent Link: https://hdl.handle.net/11104/0332616 - 8.0551156 - ÚOCHB 2022 CZ eng A - Abstract
Sýs, Jakub - Hubálek, Martin - Cvačka, Josef
Proteins Structure and Interactions Studied by Hydrogen Deuterium Exchange Mass Spectrometry.
Prague Meeting on Historical Perspectives of Mass Spectrometry, Book of Abstracts. Praha: Ústav organické chemie a biochemie AV ČR, v. v. i., 2021 - (Hoskovec, M.; Cvačka, J.). s. 28. ISBN 978-80-86241-66-1.
[Prague Meeting on Historical Perspectives of Mass Spectrometry. 13.10.2021-14.10.2021, Praha]
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : proteins * hydrogen-deuterium exchange * protein-protein interactions
OECD category: Biochemistry and molecular biology
http://ms-prague2021.uochb.cas.cz/assets/pdf/BoA_final.pdf
Permanent Link: http://hdl.handle.net/11104/0326603 - 9.0550981 - ÚOCHB 2022 CZ eng A - Abstract
Sýs, Jakub - Hubálek, Martin - Boušová, Kristýna - Vondrášek, Jiří
First Year of Hydrogen-Deuterium Exchange at IOCB: The effect of domain order on fusion two-domain proteins structure.
7. Neformální proteomické setkání. Hradec Králové: Proteomická sekce České společnosti pro biochemii a molekulární biologii, 2021. s. 25.
[Neformální proteomické setkání /7./. 25.11.2021-26.11.2021, Hradec Králové]
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : hydrogen-deuterium exchange * proteins * protein-protein interactions
OECD category: Biochemistry and molecular biology
https://drive.google.com/file/d/13VvDDFQMpDf0B2WoucYAMtDB5UCidlHk/view
Permanent Link: http://hdl.handle.net/11104/0326258 - 10.0550964 - ÚOCHB 2022 CZ eng A - Abstract
Sýs, Jakub - Novotný, R. - Rumlová, M. - Hubálek, Martin - Hrabal, R. - Cvačka, Josef
Interaction interface of Tick-borne encephalitis virus C protein dimer.
Sborník 22. ročník Školy hmotnostní spektrometrie. Brno: Spektroskopická společnost Jana Marka Marci, 2021 - (Holčapek, M.; Jirásko, R.; Chocholoušková, M.; Peterka, O.). ISBN 978-80-88195-25-2.
[Škola hmotnostní spektrometrie /22./. 05.09.2021-10.09.2021, Srní]
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : tick-borne encephalitis virus * protein crosslinking * hydrogen-deuterium exchange
OECD category: Biochemistry and molecular biology
Permanent Link: http://hdl.handle.net/11104/0326245