Search results
- 1.0547429 - MBÚ 2022 RIV CH eng J - Journal Article
Shaposhnikova, Anastasiia - Kutý, M. - Chaloupková, R. - Damborský, J. - Smatanová, I.K. - Minofar, Babak - Prudnikova, T.
Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids.
Crystals. Roč. 11, č. 9 (2021), č. článku 1052. ISSN 2073-4352. E-ISSN 2073-4352
R&D Projects: GA MŠMT(CZ) LM2015047
Research Infrastructure: e-INFRA CZ - 90140; RECETOX RI - 90121
Institutional support: RVO:61388971
Keywords : haloalkane dehalogenase (HLD) * ionic liquids (ILs) * molecular dynamics (MD) simulations * protein stability * 2-hydroxyethylammonium acetate ([ETA][ACC]) * 1-butyl-3-methylimidazolium methyl sulfate ([EMIM][CHS])
OECD category: Biophysics
Impact factor: 2.670, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2073-4352/11/9/1052
Permanent Link: http://hdl.handle.net/11104/0323664 - 2.0539596 - ÚMG 2021 RIV SE eng J - Journal Article
Marek, M. - Chaloupková, R. - Prudnikova, T. - Sato, Y. - Řezáčová, Pavlína - Nagata, Y. - Smatanová, I.K. - Damborský, J.
Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family.
Computational and Structural Biotechnology Journal. Roč. 18, June (2020), s. 1352-1362. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68378050
Keywords : Haloalkane dehalogenase (HLD) * Biocatalysis * Loop-helix transplantation * X-ray crystallography * Enantioselectivity * Access tunnel * Enzyme engineering * Protein design
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302828?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0317304 - 3.0520840 - MBÚ 2020 RIV CH eng J - Journal Article
Chrást, L. - Tratsiak, K. - Planas-Iglesias, J. - Daniel, L. - Prudnikova, Tatyana - Brezovský, J. - Bednář, D. - Kutá Smatanová, Ivana - Chaloupková, R. - Dambrovský, J.
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.
Microorganisms. Roč. 7, č. 11 (2019), č. článku 498. E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2015055
Research Infrastructure: C4SYS - 90055; RECETOX II - 90051; ELIXIR-CZ - 90047; CESNET II - 90042; CERIT-SC - 90085
Institutional support: RVO:61388971
Keywords : haloalkane dehalogenase * thermostability * psychrophile
OECD category: Biochemistry and molecular biology
Impact factor: 4.152, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2076-2607/7/11/498
Permanent Link: http://hdl.handle.net/11104/0305501 - 4.0511267 - ÚOCHB 2020 RIV CH eng J - Journal Article
Chrást, L. - Tratsiak, Katsiaryna - Planas-Iglesias, J. - Daniel, L. - Prudnikova, T. - Brezovský, J. - Bednář, D. - Kutá Smatanová, I. - Chaloupková, R. - Damborský, J.
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.
Microorganisms. Roč. 7, č. 11 (2019), č. článku 498. E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * thermostability * psychrophile * access tunnel * dimer * catalytic pentad * enantiselectivity
OECD category: Biochemistry and molecular biology
Impact factor: 4.152, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2076-2607/7/11/498
Permanent Link: http://hdl.handle.net/11104/0301587 - 5.0508541 - MBÚ 2020 RIV CH eng J - Journal Article
Prudnikova, Tatyana - Kascaková, B. - Mesters, J. R. - Grinkevich, P. - Havlíčková, P. - Mazur, Andrii - Shaposhnikova, Anastasiia - Chaloupková, R. - Dambrovský, J. - Kutý, Michal - Kutá Smatanová, Ivana
Crystallization and Crystallographic Analysis of a Bradyrhizobium Elkanii USDA94 Haloalkane Dehalogenase Variant with an Eliminated Halide-Binding Site.
Crystals. Roč. 9, č. 7 (2019), č. článku 375. ISSN 2073-4352. E-ISSN 2073-4352
R&D Projects: GA MŠMT(CZ) LM2015055
Grant - others:AV ČR(CZ) DAAD-16-09
Program: Bilaterální spolupráce
Research Infrastructure: C4SYS - 90055
Institutional support: RVO:61388971
Keywords : Haloalkane dehalogenase * halide-binding site * random microseeding
OECD category: Biochemistry and molecular biology
Impact factor: 2.404, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2073-4352/9/7/375
Permanent Link: http://hdl.handle.net/11104/0299416File Download Size Commentary Version Access 190_Crystallization and Crystallographic Analysis of a.pdf 2 3.2 MB Publisher’s postprint require - 6.0505903 - ÚMG 2020 RIV US eng J - Journal Article
Tratsiak, K. - Prudnikova, Tatyana - Drienovská, I. - Damborský, J. - Brynda, Jiří - Pachl, P. - Kutý, Michal - Chaloupková, R. - Řezáčová, Pavlína - Kutá Smatanová, Ivana
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 75, Pt 5 (2019), s. 324-331. E-ISSN 2053-230X
Institutional support: RVO:68378050 ; RVO:61388971
Keywords : haloalkane dehalogenase * alpha/beta-hydrolase * X-ray diffraction * psychrophiles * structural analysis * Psychrobacter cryohalolentis
OECD category: Biophysics; Biochemistry and molecular biology (MBU-M)
Impact factor: 0.968, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2053230X19002796
Permanent Link: http://hdl.handle.net/11104/0297526 - 7.0505284 - ÚOCHB 2020 RIV GB eng J - Journal Article
Tratsiak, Katsiaryna - Prudnikova, T. - Drienovská, I. - Damborský, J. - Brynda, Jiří - Pachl, Petr - Kutý, M. - Chaloupková, R. - Řezáčová, Pavlína - Kutá Smatanová, I.
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 75, č. 5 (2019), s. 324-331. E-ISSN 2053-230X
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * alpha/beta-hydrolase * X-ray diffraction * psychrophiles * structural analysis * Psychrobacter cryohalolentis
OECD category: Biochemistry and molecular biology
Impact factor: 0.968, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2053230X19002796
Permanent Link: http://hdl.handle.net/11104/0296758 - 8.0477522 - MBÚ 2018 RIV DE eng J - Journal Article
Kotík, Michael - Vaňáček, P. - Kuňka, A. - Prokop, Z. - Dambrovský, J.
Metagenome-derived haloalkane dehalogenases with novel catalytic properties.
Applied Microbiology and Biotechnology. Roč. 101, č. 16 (2017), s. 6385-6397. ISSN 0175-7598. E-ISSN 1432-0614
R&D Projects: GA ČR GAP504/10/0137; GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) LM2015055
Institutional support: RVO:61388971
Keywords : Haloalkane dehalogenase * Metagenomic DNA * Heterologous production
OECD category: Biochemistry and molecular biology
Impact factor: 3.340, year: 2017
Permanent Link: http://hdl.handle.net/11104/0273853 - 9.0462186 - ÚVGZ 2017 RIV NL eng J - Journal Article
Bidmanová, Š. - Kotlanova, M. - Rataj, Tomáš - Damborský, J. - Trtílek, M. - Prokop, Z.
Fluorescence-based biosensor for monitoring of environmental pollutants: From concept to field application.
Biosensors and Bioelectronics. Roč. 84, oct (2016), s. 97-105. ISSN 0956-5663. E-ISSN 1873-4235
Grant - others:GA MŠk(CZ) LO1214
Research Infrastructure: CzeCOS II - 90061
Institutional support: RVO:67179843
Keywords : dehydrochlorinase * environmental monitoring * field-testing * haloalkane dehalogenase * Halogenated pollutant * optical biosensor
Subject RIV: EH - Ecology, Behaviour
Impact factor: 7.780, year: 2016
Permanent Link: http://hdl.handle.net/11104/0261685 - 10.0430522 - ÚOCHB 2015 RIV DK eng J - Journal Article
Chaloupková, R. - Prudnikova, T. - Řezáčová, Pavlína - Prokop, Z. - Koudeláková, T. - Daniel, L. - Březovský, J. - Ikeda-Ohtsubo, W. - Sato, Y. - Kutý, Michal - Nagata, Y. - Kutá-Smatanová, Ivana - Damborský, J.
Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Acta Crystallographica Section D-Biological Crystallography. Roč. 70, July (2014), s. 1884-1897. ISSN 0907-4449
Grant - others:GA ČR(CZ) GAP207/12/0775; GA MŠk(CZ) LO1214; GA MŠk(CZ) LM2010005
Program: GA
Institutional support: RVO:61388963 ; RVO:67179843
Keywords : haloalkane dehalogenase * halide-binding site * catalytic activity * substrate specificity * enzyme stability
Subject RIV: CE - Biochemistry
Impact factor: 7.232, year: 2013
Permanent Link: http://hdl.handle.net/11104/0235571