Search results

  1. 1.
    0573561 - MBÚ 2024 RIV GB eng J - Journal Article
    Kachale, A. - Pavlíková, Zuzana - Nenarokova, A. - Roithová, Adriana - Durante, I. M. - Miletínová, Petra - Záhonová, K. - Nenarokov, S. - Votýpka, J. - Horáková, Eva - Ross, R. L. - Yurchenko, V. - Beznosková, Petra - Paris, Z. - Valášek, Leoš Shivaya - Lukeš, J.
    Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment.
    Nature. Roč. 613, č. 7965 (2023), s. 751-758. ISSN 0028-0836. E-ISSN 1476-4687
    R&D Projects: GA ČR(CZ) GA20-00579S
    Grant - others:AV ČR(CZ) Premium Academiae of the Academy of Sciences of the Czech Republic
    Program: Akademická prémie - Praemium Academiae
    Research Infrastructure: e-INFRA CZ - 90140; Czech-BioImaging II - 90129
    Institutional support: RVO:61388971
    Keywords : nuclear genetic-code * identity elements * translation * recognition * degradation * evolution * nonsense * binds
    OECD category: Biochemistry and molecular biology
    Impact factor: 64.8, year: 2022
    Method of publishing: Limited access
    https://www.nature.com/articles/s41586-023-06260-9
    Permanent Link: https://hdl.handle.net/11104/0343987
     
     
  2. 2.
    0571540 - BTÚ 2024 RIV US eng J - Journal Article
    Chaudhari, Aditya S. - Chatterjee, Aditi - Domingos, C. A. O. - Andrikopoulos, Prokopis C. - Liu, Yingliang - Andersson, Inger - Schneider, Bohdan - Lorenz-Fonfria, Victor A. - Fuertes, Gustavo
    Genetically encoded non-canonical amino acids reveal asynchronous dark reversion of chromophore, backbone, and side-chains in EL222.
    Protein Science. Roč. 32, č. 4 (2023), č. článku e4590. ISSN 0961-8368. E-ISSN 1469-896X
    R&D Projects: GA MŠMT(CZ) EF18_046/0015974; GA MŠMT EF15_003/0000447; GA MŠMT(CZ) LM2018127
    Institutional support: RVO:86652036
    Keywords : flavoproteins * FTIR spectroscopy * genetic code expansion * kinetics * vis spectroscopy
    OECD category: Biochemistry and molecular biology
    Impact factor: 8, year: 2022
    Method of publishing: Open access
    https://onlinelibrary.wiley.com/doi/10.1002/pro.4590
    Permanent Link: https://hdl.handle.net/11104/0347902
     
     
  3. 3.
    0559020 - ÚOCHB 2023 RIV GB eng J - Journal Article
    Tretyachenko, V. - Vymětal, Jiří - Neuwirthova, T. - Vondrášek, Jiří - Fujishima, K. - Hlouchová, Klára
    Modern and prebiotic amino acids support distinct structural profiles in proteins.
    Open Biology. Roč. 12, č. 6 (2022), č. článku 220040. E-ISSN 2046-2441
    Institutional support: RVO:61388963
    Keywords : protein sequence space * protein structure * amino acid alphabet * genetic code evolution * random proteins
    OECD category: Biochemistry and molecular biology
    Impact factor: 5.8, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1098/rsob.220040
    Permanent Link: https://hdl.handle.net/11104/0332442
     
     
  4. 4.
    0556783 - ÚOCHB 2023 RIV US eng J - Journal Article
    Giacobelli, V. G. - Fujishima, K. - Lepšík, Martin - Tretyachenko, V. - Kadavá, T. - Makarov, M. - Bednárová, Lucie - Novák, Petr - Hlouchová, Klára
    In Vitro Evolution Reveals Noncationic Protein-RNA Interaction Mediated by Metal Ions.
    Molecular Biology and Evolution. Roč. 39, č. 3 (2022), č. článku msac032. ISSN 0737-4038. E-ISSN 1537-1719
    R&D Projects: GA MŠMT(CZ) EF16_019/0000729; GA MŠMT(CZ) ED1.1.00/02.0109
    EU Projects: European Commission(XE) 823839 - EPIC-XS
    Research Infrastructure: e-INFRA CZ - 90140
    Institutional support: RVO:61388963 ; RVO:61388971
    Keywords : RNA-protein interaction * genetic code evolution * protein evolution * mRNA-display
    OECD category: Biochemistry and molecular biology
    Impact factor: 10.7, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1093/molbev/msac032
    Permanent Link: http://hdl.handle.net/11104/0330979
    FileDownloadSizeCommentaryVersionAccess
    0556783.pdf5982.6 KBPublisher’s postprintopen-access
     

    Research data: Mendeley Data
     
  5. 5.
    0543393 - MBÚ 2022 RIV GB eng J - Journal Article
    Beznosková, Petra - Bidou, L. - Namy, O. - Valášek, Leoš Shivaya
    Increased expression of tryptophan and tyrosine tRNAs elevates stop codon readthrough of reporter systems in human cell lines.
    Nucleic Acids Research. Roč. 49, č. 9 (2021), s. 5202-5215. ISSN 0305-1048. E-ISSN 1362-4962
    R&D Projects: GA ČR(CZ) GA20-00579S; GA ČR(CZ) GA18-02014S
    Institutional support: RVO:61388971
    Keywords : cognate transfer-rnas * messenger-rna * termination codons * genetic-code * translation * cancer * nonsense * downstream * efficiency * sense
    OECD category: Microbiology
    Impact factor: 19.160, year: 2021
    Method of publishing: Open access
    https://academic.oup.com/nar/article/49/9/5202/6261788?login=true
    Permanent Link: http://hdl.handle.net/11104/0320610
     
     
  6. 6.
    0541647 - ÚOCHB 2022 RIV US eng J - Journal Article
    Makarov, M. - Meng, J. - Tretyachenko, V. - Srb, Pavel - Březinová, A. - Giacobelli, V. G. - Bednárová, Lucie - Vondrášek, Jiří - Dunker, A. K. - Hlouchová, Klára
    Enzyme catalysis prior to aromatic residues: Reverse engineering of a dephospho‐CoA kinase.
    Protein Science. Roč. 30, č. 5 (2021), s. 1022-1034. ISSN 0961-8368. E-ISSN 1469-896X
    Research Infrastructure: CIISB II - 90127
    Institutional support: RVO:61388963
    Keywords : aromatic amino acids * catalysis evolution * genetic code evolution * protein disorder * protein structure evolution
    OECD category: Biochemistry and molecular biology
    Impact factor: 6.993, year: 2021
    Method of publishing: Limited access
    https://doi.org/10.1002/pro.4068
    Permanent Link: http://hdl.handle.net/11104/0319182
     
     
  7. 7.
    0507481 - ÚMG 2020 RIV GB eng J - Journal Article
    Panek, T. - Zihala, D. - Sokol, M. - Derelle, R. - Klimeš, V. - Hradilová, Miluše - Zadrobilkova, E. - Susko, E. - Roger, A. J. - Čepička, I. - Eliáš, M.
    Nuclear genetic codes with a different meaning of the UAG and the UAA codon.
    BMC BIOLOGY. Roč. 15, February (2017), č. článku 8. E-ISSN 1741-7007
    Institutional support: RVO:68378050
    Keywords : Codon reassignment * Evolution * Evolutionary constraint * Fornicata * Genetic code * Iotanema spirale * Lygus hesperus * Protists * Rhizaria * Transcriptome
    OECD category: Cell biology
    Impact factor: 5.770, year: 2017
    Method of publishing: Open access
    https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0353-y
    Permanent Link: http://hdl.handle.net/11104/0298463
     
     
  8. 8.
    0483943 - FLÚ 2018 RIV CH eng J - Journal Article
    Svoboda, Jan - Svoboda, Jan
    The Platonic Receptacle (Hypodoché), Whitehead’s Philosophy, and Genome Evolution.
    Viruses. Roč. 9, č. 12 (2017), s. 1-3, č. článku 381. E-ISSN 1999-4915
    Institutional support: RVO:67985955 ; RVO:68378050
    Keywords : Platonic receptacle * Whitehead’s argument * realization of ideas * present day genetics * genetic code * evolution changes
    OECD category: Philosophy, History and Philosophy of science and technology; Virology (UMG-J)
    Impact factor: 3.761, year: 2017
    Method of publishing: Open access
    http://www.mdpi.com/1999-4915/9/12/381
    Permanent Link: http://hdl.handle.net/11104/0279117
     
     
  9. 9.
    0362929 - MÚ 2012 RIV CZ cze J - Journal Article
    Křížek, Michal - Křížek, P.
    Proč má DNA tři terminační triplety a jen jeden iniciační?
    [Why does DNA have three terminal triplets and only one initial triplet?]
    Pokroky matematiky, fyziky & astronomie. Roč. 56, č. 2 (2011), s. 98-105. ISSN 0032-2423
    R&D Projects: GA AV ČR(CZ) IAA100190803
    Institutional research plan: CEZ:AV0Z10190503
    Keywords : genetic code * codon * transtation * degenerated code * synchronization shift
    Subject RIV: EB - Genetics ; Molecular Biology
    http://dml.cz/dmlcz/141994
    Permanent Link: http://hdl.handle.net/11104/0199096
    FileDownloadSizeCommentaryVersionAccess
    Krizek4.pdf2822.7 KBPublisher’s postprintopen-access
     
     
  10. 10.
    0086756 - BFÚ 2008 RIV CZ cze J - Journal Article
    Kejnovský, Eduard
    Genetický kód. Náhodné zamrznutí, nebo postupný vývoj?
    [Genetic code. Frozen accident or evolution?]
    Vesmír. Roč. 86, č. 137 (2007), s. 588-590. ISSN 0042-4544. E-ISSN 1214-4029
    R&D Projects: GA ČR(CZ) GA204/05/2097
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : genetic code * early evolution * RNA world
    Subject RIV: BO - Biophysics
    Permanent Link: http://hdl.handle.net/11104/0004164
     
     


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