Search results
- 1.0574529 - BTÚ 2024 RIV GB eng J - Journal Article
Svoboda, Jakub - Berdár, Daniel - Kolenko, Petr - Černý, Jiří - Nováková, Zora - Pavlíček, Jiří - Schneider, Bohdan
Conformation-based refinement of 18-mer DNA structures.
Acta Crystallographica Section D-Biological Crystallography. Roč. 79, JUL 2023 (2023), s. 655-665. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LTAUSA18197; GA MŠMT EF16_019/0000778
Institutional support: RVO:86652036
Keywords : DNA structure * dnatco.datmos.org * structure validation * structure refinement * base pairing
OECD category: Biochemistry and molecular biology
Impact factor: 2.2, year: 2022
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798323004679
Permanent Link: https://hdl.handle.net/11104/0345411 - 2.0536135 - BFÚ 2021 RIV NL eng J - Journal Article
Školáková, Petra - Badri, Z. - Foldynová-Trantírková, Silvie - Ryneš, J. - Šponer, Jiří - Fojtová, Miloslava - Fajkus, Jiří - Marek, R. - Vorlíčková, Michaela - Mergny, Jean-Louis - Trantírek, L.
Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA.
Biochimica et Biophysica Acta-General Subjects. Roč. 1864, č. 9 (2020), č. článku 129651. ISSN 0304-4165. E-ISSN 1872-8006
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA19-17063S
Institutional support: RVO:68081707
Keywords : base-pairing energies * promoter region * g-quadruplex * noncovalent interactions * thermal-stability * molecular switch * rational design
OECD category: Biochemistry and molecular biology
Impact factor: 3.770, year: 2020
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S030441652030163X?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0313957 - 3.0509102 - ÚOCHB 2020 RIV GB eng J - Journal Article
Štoček, Jakub Radek - Bártová, Kateřina - Čechová, Lucie - Šála, Michal - Socha, Ondřej - Janeba, Zlatko - Dračínský, Martin
Determination of nucleobase-pairing free energies from rotamer equilibria of 2-(methylamino)pyrimidines.
Chemical Communications. Roč. 55, č. 74 (2019), s. 11075-11078. ISSN 1359-7345. E-ISSN 1364-548X
R&D Projects: GA ČR(CZ) GA18-11851S
Institutional support: RVO:61388963
Keywords : NMR spectroscopy * base pairing * hydrogen bonding
OECD category: Physical chemistry
Impact factor: 5.996, year: 2019
Method of publishing: Limited access
https://pubs.rsc.org/en/content/articlelanding/2019/CC/C9CC05513D#!divAbstract
Permanent Link: http://hdl.handle.net/11104/0299894 - 4.0506051 - ÚOCHB 2020 CZ eng A - Abstract
Štoček, Jakub Radek - Čechová, Lucie - Šála, Michal - Dračínský, Martin
Intermolecular interactions studied by NMR spectroscopy.
34th NMR Valtice. Central European NMR Meeting. Brno: Tribun EU, 2019 - (Novotný, J.; Marek, R.). C8. ISBN 978-80-263-1462-2.
[NMR Valtice. Central European NMR Meeting /34./. 31.03.2019-03.04.2019, Valtice]
R&D Projects: GA ČR(CZ) GA18-11851S
Institutional support: RVO:61388963
Keywords : NMR spectroscopy * hydrogen bonding * base pairing
OECD category: Physical chemistry
Permanent Link: http://hdl.handle.net/11104/0297345 - 5.0342391 - ÚOCHB 2011 CZ eng A - Abstract
Kratochvílová, Irena - Todorciuc, Tatiana - Král, Karel - Němec, Hynek - Bunček, M. - Šebera, Jakub - Záliš, Stanislav - Vokáčová, Zuzana - Sychrovský, Vladimír - Bednárová, Lucie - Mojzeš, P. - Schneider, Bohdan
Charge Transport in DNA Oligonucleotides with Various Base-Pairing Patterns.
Materials Structure in Chemistry, Biology, Physics and Technology. Czech and Slovak Crystallographic Association. Roč. 17, 1a (2010), L7-L7. ISSN 1211-5894.
[Discussions in Structural Molecular Biology /8./. 18.03.2010-20.03.2010, Nové Hrady]
R&D Projects: GA AV ČR KAN401770651; GA ČR GA203/08/1594
Institutional research plan: CEZ:AV0Z40500505; CEZ:AV0Z40550506; CEZ:AV0Z10100520; CEZ:AV0Z40400503; CEZ:AV0Z50520701
Keywords : base-pairing patterns * oligonucleotides * DNA
Subject RIV: CF - Physical ; Theoretical Chemistry
Permanent Link: http://hdl.handle.net/11104/0185138 - 6.0341004 - BFÚ 2010 RIV DE eng J - Journal Article
Šponer, Judit E. - Vázquez-Mayagoitia, Á. - Sumpter, B.G. - Leszczynski, J. - Šponer, Jiří - Otyepka, M. - Banáš, P. - Fuentes-Cabrera, M.
Theoretical studies on the intermolecular interactions of potentially primordial base-pair analogues.
Chemistry - A European Journal. Roč. 16, č. 10 (2010), s. 3057-3065. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA MŠMT(CZ) LC06030; GA AV ČR(CZ) 1QS500040581; GA AV ČR(CZ) IAA400040802; GA ČR(CZ) GA203/09/1476
Grant - others:GA MŠk(CZ) LC512; GA AV ČR(CZ) IAA400550701; GA ČR(CZ) GD203/09/H046
Program: LC; IA; GD
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : quantum chemistry * base pairing * origin of life
Subject RIV: BO - Biophysics
Impact factor: 5.476, year: 2010
Permanent Link: http://hdl.handle.net/11104/0184121 - 7.0330345 - FZÚ 2010 RIV DE eng J - Journal Article
Kratochvílová, Irena - Bunček, M. - Schneider, Bohdan
Charge transfer in DNA: role of base pairing.
[Transport náboje DNA: význam párování bazí.]
European Biophysics Journal With Biophysics Letters. Roč. 38, Suppl. (2009), S123-S123. ISSN 0175-7571. E-ISSN 1432-1017.
[EBSA European Biophysics Congress /7./. Genoa, 11.07.2009-15.07.2009]
Institutional research plan: CEZ:AV0Z10100520; CEZ:AV0Z50520701
Keywords : DNA * charge transport * base pairing
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.437, year: 2009
Permanent Link: http://hdl.handle.net/11104/0176157 - 8.0322991 - BFÚ 2009 RIV US eng J - Journal Article
Mládek, Arnošt - Sharma, P. - Mitra, A. - Bhattacharyya, D. - Šponer, Jiří - Šponer, Judit E.
Trans Hoogsteen/sugar edge base pairing in RNA. Structures, energies, and stabilities from quantum chemical calculations.
[Trans Hoogsteen/sugar edge párování v RNA. Struktura, energie a stabilita z kvantově chemických výpočtů.]
Journal of Physical Chemistry B. Roč. 113, č. 6 (2009), s. 1743-1755. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA AV ČR(CZ) IAA400550701; GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) 1QS500040581; GA MŠMT(CZ) LC06030
Grant - others:GA MŠk(CZ) LC512
Program: LC
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702; CEZ:AV0Z40550506
Keywords : quantum chemical calculations * base pairing * RNA
Subject RIV: BO - Biophysics
Impact factor: 3.471, year: 2009
Permanent Link: http://hdl.handle.net/11104/0005152 - 9.0311842 - BFÚ 2009 PL eng A - Abstract
Šponer, Judit E. - Mládek, Arnošt - Réblová, Kamila - Mokdad, A. - Leszczynski, J. - Šponer, Jiří
Principles of RNA base pairing. Structures and energies of the most frequent interaction patterns from quantum chemical calculations.
[Principy RNA párování. Struktura a energetika nejčastějších interakčních vzorů z kvantově chemických výpočtů.]
Book of Abstracts. Kraków, 2008 - (Eilmes, A.; Korchowiec, J.). P17. ISBN 978-83-921060-5-0.
[Current Trends in Theoretical Chemistry V. 06.07.2008-10.07.2008, Kraków]
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNA base pairing * structures of interactions patterns
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0163074 - 10.0311431 - BFÚ 2009 PL eng A - Abstract
Šponer, Jiří
RNA base pairing and RNA building blocks.
[Párování RNA a stavební bloky RNA.]
Conference information & abstracts. Piechowice, 2008. L42.
[Modeling & Design of Molecular Materials '08. 23.06.2008-28.06.2008, Piechowice]
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : RNA base pairing * RNA building blocks
Subject RIV: BO - Biophysics
Permanent Link: http://hdl.handle.net/11104/0163048