Search results
- 1.0554847 - BFÚ 2022 RIV DE eng J - Journal Article
Kejnovská, Iva - Stadlbauer, Petr - Trantírek, L. - Renčiuk, Daniel - Gajarský, M. - Krafčík, D. - Palacký, Jan - Bednářová, Klára - Šponer, Jiří - Mergny, Jean-Louis - Vorlíčková, Michaela
G-Quadruplex Formation by DNA Sequences Deficient in Guanines: Two Tetrad Parallel Quadruplexes Do Not Fold Intramolecularly.
Chemistry - A European Journal. Roč. 27, č. 47 (2021), s. 12115-12125. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR(CZ) GA19-17063S; GA ČR(CZ) GA20-20229S; GA ČR(CZ) GA21-23718S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : amber force-field * human telomere * molecular-dynamics * nucleic-acids * k+ solution * crystal-structure
OECD category: Biochemistry and molecular biology
Impact factor: 5.020, year: 2021
Method of publishing: Limited access
https://chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/chem.202100895
Permanent Link: http://hdl.handle.net/11104/0329475 - 2.0554476 - BFÚ 2022 RIV GB eng J - Journal Article
Chen, J. - Cheng, M. - Salgado, G.F. - Stadlbauer, Petr - Zhang, X. - Amrane, S. - Guédin, A. - He, F. - Šponer, Judit E. - Ju, H. - Mergny, Jean-Louis - Zhou, J.
The beginning and the end: flanking nucleotides induce a parallel G-quadruplex topology.
Nucleic Acids Research. Roč. 49, č. 16 (2021), s. 9548-9559. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA21-23718S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : loop-length * k+ solution * dna * stability * sequence
OECD category: Biochemistry and molecular biology
Impact factor: 19.160, year: 2021
Method of publishing: Open access
https://academic.oup.com/nar/article/49/16/9548/6348194
Permanent Link: http://hdl.handle.net/11104/0329188 - 3.0536138 - BFÚ 2021 RIV US eng J - Journal Article
Islam, Barira - Stadlbauer, Petr - Vorlíčková, Michaela - Mergny, Jean-Louis - Otyepka, Michal - Šponer, Jiří
Stability of Two-Quartet G-Quadruplexes and Their Dimers in Atomistic Simulations.
Journal of Chemical Theory and Computation. Roč. 16, č. 6 (2020), s. 3447-3463. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA19-17063S
Institutional support: RVO:68081707
Keywords : molecular-dynamics simulations * human telomeric rna * resolution crystal-structure * monovalent ion parameters * force-field * k+ solution
OECD category: Physical chemistry
Impact factor: 6.006, year: 2020
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/acs.jctc.9b01068
Permanent Link: http://hdl.handle.net/11104/0313961 - 4.0520332 - BFÚ 2020 RIV GB eng J - Journal Article
Palacký, Jan - Mojzes, P. - Kejnovská, Iva - Vorlíčková, Michaela
Does Raman spectroscopy recognize different G-quadruplex arrangements?
Journal of Raman Spectroscopy. -, NOV 2019 (2019). ISSN 0377-0486. E-ISSN 1097-4555
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR GA17-12075S; GA ČR(CZ) GA19-17063S
Institutional support: RVO:68081707
Keywords : telomeric g-quadruplex * k+ solution * dna quadruplex * structure polymorphism * circular-dichroism
OECD category: Physical chemistry
Impact factor: 2.000, year: 2019
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/full/10.1002/jrs.5772
Permanent Link: http://hdl.handle.net/11104/0305019 - 5.0511784 - BFÚ 2020 RIV DE eng J - Journal Article
Bednářová, Klára - Kejnovská, Iva - Vorlíčková, Michaela - Renčiuk, Daniel
Guanine Substitutions Prevent Conformational Switch from Antiparallel to Parallel G-Quadruplex.
Chemistry - A European Journal. Roč. 25, č. 58 (2019), s. 13422-13428. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR(CZ) GJ17-19170Y; GA ČR(CZ) GA19-17063S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : human telomeric dna * k+ solution * cd spectra * stability * sequence
OECD category: Analytical chemistry
Impact factor: 4.857, year: 2019
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/full/10.1002/chem.201903015
Permanent Link: http://hdl.handle.net/11104/0302031 - 6.0501856 - BFÚ 2019 RIV GB eng J - Journal Article
Cheng, P. - Cheng, Y. - Hao, J. - Jia, G. - Zhou, J. - Mergny, Jean-Louis - Li, C.
Loop permutation affects the topology and stability of G-quadruplexes.
Nucleic Acids Research. Roč. 46, č. 18 (2018), s. 9264-9275. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : telomeric g-quadruplex * dna g-quadruplex * single-base loops * k+ solution
OECD category: Biochemistry and molecular biology
Impact factor: 11.147, year: 2018
Permanent Link: http://hdl.handle.net/11104/0293833 - 7.0486063 - BFÚ 2018 RIV NL eng J - Journal Article
Dvořáková, Zuzana - Vorlíčková, Michaela - Renčiuk, Daniel
Spectroscopic insights into quadruplexes of five-repeat telomere DNA sequences upon G-block damage.
Biochimica et Biophysica Acta-General Subjects. Roč. 1861, č. 11 (2017), s. 2750-2757. ISSN 0304-4165. E-ISSN 1872-8006
R&D Projects: GA ČR(CZ) GJ17-19170Y
Institutional support: RVO:68081707
Keywords : k+ solution * guanine quadruplexes
OECD category: Biochemistry and molecular biology
Impact factor: 3.679, year: 2017
Permanent Link: http://hdl.handle.net/11104/0280950 - 8.0476265 - BFÚ 2018 RIV GB eng J - Journal Article
Kejnovská, Iva - Bednářová, Klára - Renčiuk, Daniel - Dvořáková, Zuzana - Školáková, Petra - Trantírek, L. - Fiala, R. - Vorlíčková, Michaela - Sagi, J.
Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes.
Nucleic Acids Research. Roč. 45, č. 8 (2017), s. 4294-4305. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR GAP205/12/0466; GA ČR GA13-28310S; GA ČR(CZ) GA15-06785S; GA MŠMT(CZ) LQ1601
Institutional support: RVO:68081707
Keywords : dna-damage clusters * k+ solution * guanine quadruplexes
OECD category: Biochemistry and molecular biology
Impact factor: 11.561, year: 2017
Permanent Link: http://hdl.handle.net/11104/0272809 - 9.0392660 - BFÚ 2014 RIV GB eng J - Journal Article
Palacký, J. - Vorlíčková, Michaela - Kejnovská, Iva - Mojzeš, P.
Polymorphism of human telomeric quadruplex structure controlled by DNA concentration: a Raman study.
Nucleic Acids Research. Roč. 41, č. 2 (2013), s. 1005-1016. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA202/09/0193; GA ČR(CZ) GAP205/12/0466
Grant - others:GA ČR(CZ) ED1.1.00/02.0068
Program: ED
Institutional research plan: CEZ:AV0Z50040702
Institutional support: RVO:68081707
Keywords : INTRAMOLECULAR G-QUADRUPLEX * K+ SOLUTION * B-DNA
Subject RIV: BO - Biophysics
Impact factor: 8.808, year: 2013
Permanent Link: http://hdl.handle.net/11104/0221494 - 10.0364917 - BC 2012 RIV GB eng J - Journal Article
Hansel, R. - Loehr, F. - Foldynová-Trantírková, Silvie - Bamberg, E. - Trantírek, L. - Doetsch, V.
The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions.
Nucleic Acids Research. Roč. 39, č. 13 (2011), 5768-5775. ISSN 0305-1048. E-ISSN 1362-4962
Institutional research plan: CEZ:AV0Z60220518
Keywords : MOLECULAR CROWDING CONDITIONS * INTRAMOLECULAR G-QUADRUPLEX * CELL NMR-SPECTROSCOPY * C-MYC PROMOTER * K+ SOLUTION * DNA * STABILITY * PROTEIN * POLYMORPHISM * HYDRATION
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 8.026, year: 2011
Permanent Link: http://hdl.handle.net/11104/0200279