Search results
- 1.0575164 - BC 2024 RIV GB eng J - Journal Article
Albanaz, A.T.S. - Carrington, M. - Frolov, A. - Ganyukova, A.I. - Gerasimov, E. S. - Kostygov, A.Y. - Lukeš, Julius - Malysheva, M. N. - Votýpka, Jan - Zakharova, A. - Záhonová, Kristýna - Zimmer, S.L. - Yurchenko, V. - Butenko, Anzhelika
Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae.
BMC Genomics. Roč. 24, č. 1 (2023), č. článku 471. ISSN 1471-2164. E-ISSN 1471-2164
R&D Projects: GA MŠMT(CZ) EF16_019/0000759; GA ČR(CZ) GA22-14356S; GA ČR(CZ) GA23-07695S
Institutional support: RVO:60077344
Keywords : Trypanosomatids * Genome assembly * Whole-genome sequencing * Monoxenous * Dixenous * Parasite * Protist
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 4.4, year: 2022
Method of publishing: Open access
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-023-09591-z
Permanent Link: https://hdl.handle.net/11104/0345274 - 2.0559976 - BC 2022 RIV JP eng J - Journal Article
Mixao, V. - Hegedüsová, Eva - Saus, E. - Pryszcz, L. P. - Cillingová, A. - Nosek, J. - Gabaldon, T.
Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations.
Dna Research. Roč. 28, č. 3 (2021), č. článku dsab006. ISSN 1340-2838. E-ISSN 1756-1663
Institutional support: RVO:60077344
Keywords : Candida subhashii * genome assembly * mitochondria * hybrid * metabolism of hydroxyaromatic compounds
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 4.477, year: 2021
Method of publishing: Open access
https://academic.oup.com/dnaresearch/article/28/3/dsab006/6299387?login=true
Permanent Link: https://hdl.handle.net/11104/0333084 - 3.0549135 - ÚBO 2022 RIV US eng J - Journal Article
Nürnberger, Beate - Baird, Stuart J. E. - Čížková, Dagmar - Bryjová, Anna - Mudd, A. B. - Blaxter, M. L. - Szymura, J. M.
A dense linkage map for a large repetitive genome: discovery of the sex-determining region in hybridizing fire-bellied toads (Bombina bombina and Bombina variegata).
G3-Genes, Genomes, Genetics. Roč. 11, č. 12 (2021), č. článku jkab286. ISSN 2160-1836. E-ISSN 2160-1836
R&D Projects: GA ČR(CZ) GA16-26714S
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:68081766
Keywords : hybrid zone * targeted capture * sex-determining region * segregation distortion * anurans * linkage map * large-scale synteny * population pileups diplotyping * genome assembly
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.542, year: 2021
Method of publishing: Open access
https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab286/6353606
Permanent Link: http://hdl.handle.net/11104/0325153File Download Size Commentary Version Access 0549135.pdf 0 1.9 MB Publisher’s postprint open-access - 4.0540844 - BC 2021 RIV CH eng J - Journal Article
d'Avila-Levy, C.M. - Bearzatto, B. - Ambroise, J. - Helaers, R. - Butenko, Anzhelika - Yurchenko, V. - Morelli, K.A. - Santos, H.L.C. - Brouillard, P. - Grellier, P. - Gala, J.-L. - Vikkula, M.
First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing.
Tropical Medicine and Infectious Disease. Roč. 5, č. 1 (2020). E-ISSN 2414-6366
R&D Projects: GA MŠMT(CZ) EF16_019/0000759
Institutional support: RVO:60077344
Keywords : insect trypanosomatids * diversity * parasites * phylogeny * inference * genome assembly * monoxenous trypanosomatids * insect trypanosomatids * Trypanosomatidae * whole genome
OECD category: Tropical medicine
Method of publishing: Open access
file:///C:/Users/katka/AppData/Local/Temp/tropicalmed-05-00025-v2.pdf
Permanent Link: http://hdl.handle.net/11104/0318483 - 5.0506096 - ÚEB 2020 RIV CH eng J - Journal Article
Kapustová, Veronika - Tulpová, Zuzana - Toegelová, Helena - Novák, Petr - Macas, Jiří - Karafiátová, Miroslava - Hřibová, Eva - Doležel, Jaroslav - Šimková, Hana
The Dark Matter of Large Cereal Genomes: Long Tandem Repeats.
International Journal of Molecular Sciences. Roč. 20, č. 10 (2019), č. článku 2483. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA17-17564S; GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:61389030 ; RVO:60077344
Keywords : bac * barley * bread wheat * genome assembly * optical mapping * ribosomal DNA
OECD category: Biochemistry and molecular biology; Genetics and heredity (medical genetics to be 3) (BC-A)
Impact factor: 4.556, year: 2019
Method of publishing: Open access
http://doi.org/10.3390/ijms20102483
Permanent Link: http://hdl.handle.net/11104/0297367File Download Size Commentary Version Access 2019_Kapustova_INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES_2483.pdf 8 1.6 MB Other open-access - 6.0498190 - ÚEB 2019 RIV CH eng J - Journal Article
Doležel, Jaroslav - Čížková, Jana - Šimková, Hana - Bartoš, Jan
One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are.
International Journal of Molecular Sciences. Roč. 19, č. 11 (2018), č. článku 3554. E-ISSN 1422-0067
R&D Projects: GA MŠMT(CZ) LO1204
Institutional support: RVO:61389030
Keywords : flow cytometry * genome size * nuclear DNA content * reference genome assembly * standardization
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 4.183, year: 2018
Permanent Link: http://hdl.handle.net/11104/0290586File Download Size Commentary Version Access 2018_Dolezel_International journal of molecular sciences_3554.pdf 7 234.2 KB Other open-access - 7.0459912 - ÚEB 2017 RIV US eng J - Journal Article
Martin, G. - Baurens, F.C. - Droc, G. - Rouard, M. - Cenci, A. - Kilian, A. - Hastie, A. - Doležel, Jaroslav - Aury, J. M. - Alberti, A. - Carreel, F. - D'Hont, A.
Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods.
BMC Genomics. Roč. 17, MAR 16 (2016), s. 243. ISSN 1471-2164. E-ISSN 1471-2164
Institutional support: RVO:61389030
Keywords : Musa acuminata * Genome assembly * Bioinformatics tool
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 3.729, year: 2016
Permanent Link: http://hdl.handle.net/11104/0260068File Download Size Commentary Version Access 2016_Martin_BMC GENOMICS_243.pdf 1 1.8 MB Other open-access - 8.0432721 - ÚEB 2015 RIV US eng J - Journal Article
Ruperao, P. - Chan, C.K.K. - Azam, S. - Karafiátová, Miroslava - Hayashi, S. - Čížková, Jana - Šimková, Hana - Vrána, Jan - Doležel, Jaroslav - Varshney, R.K. - Edwards, D. … Total 21 authors
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.
Plant Biotechnology Journal. Roč. 12, č. 6 (2014), s. 778-786. ISSN 1467-7644. E-ISSN 1467-7652
R&D Projects: GA ČR GBP501/12/G090; GA MŠMT(CZ) LO1204
Institutional support: RVO:61389030
Keywords : chickpea * genome assembly * cytogenetics
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 5.752, year: 2014
Permanent Link: http://hdl.handle.net/11104/0237092File Download Size Commentary Version Access 2014_Ruperao_PLANT BIOTECHNOLOGY JOURNAL_778.pdf 5 664.9 KB Other open-access - 9.0389813 - BC 2013 RIV GB eng J - Journal Article
Kelly, L.J. - Leitch, A.R. - Fay, M. F. - Renny-Byfield, S. - Pellicer, J. - Macas, Jiří - Leitch, I.J.
Why size really matters when sequencing plant genomes.
Plant Ecology & Diversity. Roč. 5, č. 4 (2012), s. 415-425. ISSN 1755-0874. E-ISSN 1755-1668
Institutional research plan: CEZ:AV0Z50510513
Institutional support: RVO:60077344
Keywords : C-value * genome assembly * genome size evolution * genome sequencing
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 0.924, year: 2012
Permanent Link: http://hdl.handle.net/11104/0218694 - 10.0365378 - ÚEB 2012 RIV US eng J - Journal Article
Berkman, O. J. - Skarshewski, A. - Lorenc, M. T. - Kubaláková, Marie - Šimková, Hana - Batley, J. - Doležel, Jaroslav - Edwards, D. … Total 17 authors
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.
Plant Biotechnology Journal. Roč. 9, č. 7 (2011), s. 768-775. ISSN 1467-7644. E-ISSN 1467-7652
R&D Projects: GA ČR GA521/07/1573; GA MŠMT ED0007/01/01
Institutional research plan: CEZ:AV0Z50380511
Keywords : wheat genome sequence * chromosome 7 * genome assembly
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 5.442, year: 2011
Permanent Link: http://hdl.handle.net/11104/0200633