Search results
- 1.0579941 - ÚOCHB 2024 RIV GB eng J - Journal Article
Faltejsková, Kateřina - Vondrášek, Jiří
PAPerFly: Partial Assembly-based Peak Finder for ab initio binding site reconstruction.
BMC Bioinformatics. Roč. 24, č. 1 (2023), č. článku 487. ISSN 1471-2105. E-ISSN 1471-2105
R&D Projects: GA MŠMT(CZ) EF16_019/0000729
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388963
Keywords : ChIP-seq * DNA recognition * transcription factor * peak analysis * algorithm * graph theory
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 3, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s12859-023-05613-5
Permanent Link: https://hdl.handle.net/11104/0348738 - 2.0561822 - ÚEB 2023 RIV US eng J - Journal Article
Navrátilová, Pavla - Toegelová, Helena - Tulpová, Zuzana - Kuo, Y. T. - Stein, N. - Doležel, Jaroslav - Houben, A. - Šimková, Hana - Mascher, M.
Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.
Plant Biotechnology Journal. Roč. 20, č. 7 (2022), s. 1373-1386. ISSN 1467-7644. E-ISSN 1467-7652
R&D Projects: GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131; GA ČR(CZ) GA17-17564S; GA ČR(CZ) GC18-14450J
Institutional support: RVO:61389030
Keywords : CenH3 * Cereba * ChIP-seq * flow cytometry * nanopore * PacBio HiFi reads * ribosomal DNA * satellite * telomeric repeats
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 13.8, year: 2022
Method of publishing: Open access
https://doi.org/10.1111/pbi.13816
Permanent Link: https://hdl.handle.net/11104/0334316File Download Size Commentary Version Access 2022_Navratilova_Plant Biotechnology Journal_1373.pdf 1 3.9 MB Other open-access - 3.0559181 - BC 2023 RIV US eng J - Journal Article
Marian, I.M. - Vonk, P.J. - Valdes, I.D. - Barry, K. - Bostock, B. - Carver, A. - Daum, C. - Lerner, H. - Lipzen, A. - Park, Hongjae - Schuller, M.B.P. - Tegelaar, M. - Tritt, A. - Schmutz, J. - Grimwood, J. - Lugones, L.G. - Choi, I.G. - Wösten, H.A.B. - Grigoriev, I.V. - Ohm, R.A.
The transcription factor Roc1 is a key regulator of cellulose degradation in the wood-decaying mushroom Schizophyllum commune.
mBio. Roč. 13, č. 3 (2022), č. článku 00628-22. ISSN 2161-2129. E-ISSN 2150-7511
Institutional support: RVO:60077344
Keywords : ChIP-Seq * comparative genomics * comparative transcriptomics * fungi * gene regulation * lignocellulose degradation
OECD category: Mycology
Impact factor: 6.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1128/mbio.00628-22
Permanent Link: https://hdl.handle.net/11104/0340417 - 4.0532455 - BC 2021 RIV US eng J - Journal Article
Robledillo, Laura Avila - Neumann, Pavel - Koblížková, Andrea - Novák, Petr - Vrbová, Iva - Macas, Jiří
Extraordinary Sequence Diversity and Promiscuity of Centromeric Satellites in the Legume Tribe Fabeae.
Molecular Biology and Evolution. Roč. 37, č. 8 (2020), s. 2341-2356. ISSN 0737-4038. E-ISSN 1537-1719
R&D Projects: GA ČR(CZ) GA17-09750S; GA MŠMT(CZ) LM2015047
Institutional support: RVO:60077344
Keywords : centromere evolution * satellite DNA * CENH3 * ChIP-seq * plant chromosomes
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 16.240, year: 2020
Method of publishing: Open access
https://academic.oup.com/mbe/article/37/8/2341/5817320
Permanent Link: http://hdl.handle.net/11104/0310942 - 5.0456328 - BFÚ 2016 RIV NL eng J - Journal Article
Schrumpfová, P. - Vychodilová, I. - Hapala, J. - Schorová, Š. - Dvořáček, Vojtěch - Fajkus, Jiří
Telomere binding protein TRB1 is associated with promoters of translation machinery genes in vivo.
Plant Molecular Biology. Roč. 90, 1-2 (2016), s. 189-206. ISSN 0167-4412. E-ISSN 1573-5028
R&D Projects: GA ČR(CZ) GA13-06943S
Institutional support: RVO:68081707
Keywords : Telomere repeat binding * ChIP-seq * Arabidopsis thaliana
Subject RIV: BO - Biophysics
Impact factor: 3.356, year: 2016
Permanent Link: http://hdl.handle.net/11104/0256894 - 6.0443201 - FGÚ 2016 RIV GB eng J - Journal Article
Heinig, M. - Colomé-Tatché, M. - Taudt, A. - Rintisch, C. - Schafer, S. - Pravenec, Michal - Hubner, N. - Vingron, M. - Johannes, F.
histoneHMM: Differential analysis of histone modifications with broad genomic footprints.
BMC Bioinformatics. Roč. 16, Feb 22 (2015), s. 60. ISSN 1471-2105. E-ISSN 1471-2105
R&D Projects: GA MŠMT(CZ) 7E10067; GA ČR(CZ) GA13-04420S
Institutional support: RVO:67985823
Keywords : ChIP-seq * histone modifications * Hidden Markov model * computational biology * differential analysis
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 2.435, year: 2015
Permanent Link: http://hdl.handle.net/11104/0245945 - 7.0429012 - FGÚ 2015 RIV US eng J - Journal Article
Rintisch, C. - Heinig, M. - Bauerfeind, A. - Schafer, S. - Mieth, Ch. - Patone, G. - Hummel, O. - Chen, W. - Cook, S. - Cuppen, E. - Colomé-Tatché, M. - Johannes, F. - Jansen, R. C. - Neil, H. - Werner, M. - Pravenec, Michal - Vingron, M. - Hubner, N.
Natural variation of histone modification and its impact on gene expression in the rat genome.
Genome Research. Roč. 24, JUN (2014), s. 942-953. ISSN 1088-9051. E-ISSN 1549-5469
R&D Projects: GA MŠMT(CZ) 7E10067; GA ČR(CZ) GAP301/10/0290; GA MŠMT(CZ) LL1204
Institutional support: RVO:67985823
Keywords : ChIP-seq * histone modification * gene expression * genetic linkage analysis
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 14.630, year: 2014
Permanent Link: http://hdl.handle.net/11104/0234214