https://github.com/almaavu/Corrimag
Correlation of MA-XRF or SEM-EDS element maps.
Python3
https://www.python.org/downloads/
ALMA Corrimag
python -m pip install git+https://github.com/almaavu/Corrimag.git
python -m pip install requirements.txt
- numpy
- pandas
- matplotlib
- scipy
- scikit-image
- imageio
python -m corrimag "d:/maps"
Without installation:
python corrimag.py "d:/maps"
- Directory path with element maps.
- XLSX file with correlation coefficients
- Correlation matrix image
https://en.wikipedia.org/wiki/Pearson_correlation_coefficient
https://imagej.net/imaging/colocalization-analysis
| pair | r2 | r | m | b | |
|---|---|---|---|---|---|
| 6 | Cr Pb-LB | 0.87 | 0.93 | 1.08 | -0.06 |
| 1 | Ca Hg | 0.80 | 0.90 | 0.77 | 0.04 |
| 10 | Hg S | 0.43 | 0.66 | 0.56 | -0.12 |
| 3 | Ca S | 0.21 | 0.45 | 0.33 | -0.02 |
| 0 | Ca Cr | 0.01 | 0.12 | ||
| 2 | Ca Pb-LB | 0.00 | 0.06 | ||
| 8 | Cr Zn-KB | 0.00 | 0.03 | ||
| 13 | Pb-LB Zn-KB | 0.00 | 0.01 | ||
| 5 | Cr Hg | 0.00 | -0.02 | ||
| 9 | Hg Pb-LB | 0.00 | -0.05 | ||
| 4 | Ca Zn-KB | 0.00 | -0.06 | ||
| 12 | Pb-LB S | 0.00 | -0.06 | ||
| 7 | Cr S | 0.01 | -0.08 | ||
| 11 | Hg Zn-KB | 0.08 | -0.29 | ||
| 14 | S Zn-KB | 0.65 | -0.81 | -0.57 | 0.45 |
