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The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459

SYSNO ASEP	0561992
Document Type	J - Journal Article
R&D Document Type	Journal Article
Subsidiary J	Článek ve WOS
Title	The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459
Author(s)	Gutiérrez-Larruscain, David (UEB-Q)_ORCID Krüger, Manuela (UEB-Q)_ORCID Abeyawardana, Oushadee A.J. (UEB-Q)_ORCID Belz, Claudia (UEB-Q)_ORCID Dobrev, Petre (UEB-Q)_{RID, ORCID} Vaňková, Radomíra (UEB-Q)_{RID, ORCID} Eliášová, Kateřina (UEB-Q)_{RID, ORCID} Vondráková, Zuzana (UEB-Q)_{RID, ORCID} Juříček, Miloslav (UEB-Q)_{RID, ORCID} Štorchová, Helena (UEB-Q)_{RID, ORCID}
Number of authors	10
Article number	108333
Source Title	Data in Brief. - : Elsevier - ISSN 2352-3409 Roč. 43, AUG (2022)
Number of pages	9 s.
Language	eng - English
Country	DE - Germany
Keywords	Flowering ; Gene expression ; Oxidative stress ; Photoperiod ; Phytohormones
OECD category	Plant sciences, botany
R&D Projects	GA19-01639S GA ČR - Czech Science Foundation (CSF)
	EF16_019/0000738 GA MŠMT - Ministry of Education, Youth and Sports (MEYS)
Method of publishing	Open access
Institutional support	UEB-Q - RVO:61389030
UT WOS	000832310400032
EID SCOPUS	85131422472
DOI	10.1016/j.dib.2022.108333
Annotation	The transition from vegetative growth to reproduction is the essential commitment in plant life. It is triggered by environmental cues (day length, temperature, nutrients) and regulated by the very complex signaling gene network and by phytohormones. The control of flowering is well understood in Arabidopsis thaliana and in some crops, much less is known about the other angiosperms. We performed the detailed transcriptomic survey of the course of floral induction in seedlings of Chenopodium ficifolium accession 459, a close relative of the important crop Chenopodium quinoa. It flowers earlier under short days (6 hours light) than under long days (18 hours light). Plants were sampled at the age 14, 18, 21 and 24 days in the morning and afternoon, both at long and short day, for RNA-Sequencing, and also for phytohormone analyses. We employed Illumina NovaSeq6000 platform to generate raw reads, which were cleaned and mapped against the de novo constructed transcriptome of C. ficifolium. The global gene expression levels between long and short days were pairwise compared at each time points. We identified differentially expressed genes associated with floral induction in C. ficifolium 459. Particular attention was paid to the genes responsible for phytohormone metabolism and signaling. The datasets produced by this project contributed to better understanding of the regulation of growth and development in the genus Chenopodium.
Workplace	Institute of Experimental Botany
Contact	David Klier, knihovna@ueb.cas.cz, Tel.: 220 390 469
Year of Publishing	2023
Electronic address	https://doi.org/10.1016/j.dib.2022.108333

Number of the records: 1