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Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring.
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SYSNO ASEP 0552459 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring. Author(s) Sagová-Marečková, M. (CZ)
Boenigk, J. (DE)
Bouchez, A. (FR)
Cermakova, K. (CH)
Chonova, T. (FR)
Cordier, T. (CH)
Eisendle, U. (AT)
Elersek, T. (SI)
Fazi, S. (IT)
Fleituch, T. (PL)
Frühe, L. (DE)
Gajdosova, M. (CZ)
Graupner, N. (DE)
Haegerbaeumer, A. (DE)
Kelly, A.-M. (IE)
Kopecký, J. (CZ)
Leese, F. (DE)
Nõges, P. (EE)
Orlic, S. (HR)
Panksep, K. (EE)
Pawlowski, J. (CH)
Petrusek, A. (CZ)
Piggott, J.J. (IE)
Rusch, J.C. (NO)
Salis, R. (SE)
Schenk, J. (DE)
Šimek, Karel (BC-A) RID, ORCID
Šťovíček, A. (CZ)
Strand, D.A. (NO)
Vasquez, M.I. (CY)
Vralstad, T. (NO)
Zlatkovic, S. (RS)
Zupancic, M. (SI)
Stoeck, T. (DE)Number of authors 34 Article number 116767 Source Title Water Research. - : Elsevier - ISSN 0043-1354
Roč. 191, 1 March 2021 (2021)Number of pages 21 s. Language eng - English Country GB - United Kingdom Keywords sulfate-reducing bacteria ; microbial community composition ; antibiotic-resistance genes ; waste-water ; nitrogen-fixation ; quantitative pcr ; biotic integrity ; next-generation ; phytoplankton composition ; cyanobacterial community Subject RIV EE - Microbiology, Virology OECD category Microbiology Method of publishing Open access Institutional support BC-A - RVO:60077344 UT WOS 000615940000002 EID SCOPUS 85098935344 DOI 10.1016/j.watres.2020.116767 Annotation Bioindication has become an indispensable part of water quality monitoring in most countries of the world, with the presence and abundance of bioindicator taxa, mostly multicellular eukaryotes, used for biotic indices. In contrast, microbes (bacteria, archaea and protists) are seldom used as bioindicators in routine assessments, although they have been recognized for their importance in environmental processes. Recently, the use of molecular methods has revealed unexpected diversity within known functional groups and novel metabolic pathways that are particularly important in energy and nutrient cycling. In various habitats, microbial communities respond to eutrophication, metals, and natural or anthropogenic organic pollutants through changes in diversity and function. In this review, we evaluated the common trends in these changes, documenting that they have value as bioindicators and can be used not only for monitoring but also for improving our understanding of the major processes in lotic and lentic environments. Current knowledge provides a solid foundation for exploiting microbial taxa, community structures and diversity, as well as functional genes, in novel monitoring programs. These microbial community measures can also be combined into biotic indices, improving the resolution of individual bioindicators. Here, we assess particular molecular approaches complemented by advanced bioinformatic analysis, as these are the most promising with respect to detailed bioindication value. We conclude that microbial community dynamics are a missing link important for our understanding of rapid changes in the structure and function of aquatic ecosystems, and should be addressed in the future environmental monitoring of freshwater ecosystems. (c) 2020 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ ) Workplace Biology Centre (since 2006) Contact Dana Hypšová, eje@eje.cz, Tel.: 387 775 214 Year of Publishing 2022 Electronic address https://doi.org/10.1016/j.watres.2020.116767
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