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Disentangling soil microbiome functions by perturbation
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SYSNO ASEP 0547789 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title Disentangling soil microbiome functions by perturbation Author(s) Ossowicki, Adam (BC-A) RID, ORCID
Raaijmakers, J.M. (NL)
Garbeva, P. (NL)Source Title Environmental Microbiology Reports. - : Wiley - ISSN 1758-2229
Roč. 13, č. 5 (2021), s. 582-590Number of pages 9 s. Language eng - English Country GB - United Kingdom Keywords rhizosphere microbiome ; bacterial communities ; suppressive soils ; diversity ; biodiversity ; heat Subject RIV EE - Microbiology, Virology OECD category Microbiology Method of publishing Open access Institutional support BC-A - RVO:60077344 UT WOS 000678231000001 EID SCOPUS 85111406891 DOI 10.1111/1758-2229.12989 Annotation Soil biota contribute to diverse soil ecosystem services such as greenhouse gas mitigation, carbon sequestration, pollutant degradation, plant disease suppression and nutrient acquisition for plant growth. Here, we provide detailed insight into different perturbation approaches to disentangle soil microbiome functions and to reveal the underlying mechanisms. By applying perturbation, one can generate compositional and functional shifts of complex microbial communities in a controlled way. Perturbations can reduce microbial diversity, diminish the abundance of specific microbial taxa and thereby disturb the interactions within the microbial consortia and with their eukaryotic hosts. Four different microbiome perturbation approaches, namely selective heat, specific biocides, dilution-to-extinction and genome editing are the focus of this mini-review. We also discuss the potential of perturbation approaches to reveal the tipping point at which specific soil functions are lost and to link this change to key microbial taxa involved in specific microbiome-associated phenotypes. Workplace Biology Centre (since 2006) Contact Dana Hypšová, eje@eje.cz, Tel.: 387 775 214 Year of Publishing 2022 Electronic address https://sfamjournals.onlinelibrary.wiley.com/doi/pdfdirect/10.1111/1758-2229.12989
Number of the records: 1