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Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia

SYSNO ASEP	0367250
Document Type	J - Journal Article
R&D Document Type	Journal Article
Subsidiary J	Článek ve WOS
Title	Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia
Author(s)	Petrzik, Karel (BC-A)_{RID, ORCID} Přibylová, Jaroslava (BC-A)_{RID, ORCID} Mavrič-Pleško, I. (SI) Špak, Josef (BC-A)_{RID, ORCID}
Number of authors	4
Source Title	Archives of Virology. - : Springer - ISSN 0304-8608 Roč. 156, č. 10 (2011), s. 1901-1903
Number of pages	3 s.
Language	eng - English
Country	AT - Austria
Keywords	Complete genome ; blueberry virus ; highbush blueberry
Subject RIV	EE - Microbiology, Virology
CEZ	AV0Z50510513 - UMBR-M, BC-A (2005-2011)
UT WOS	000296510200026
DOI	10.1007/s00705-011-1077-x
Annotation	Genomic DNA of blueberry red ringspot virus (genus Soymovirus, family Caulimoviridae) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate.
Workplace	Biology Centre (since 2006)
Contact	Dana Hypšová, eje@eje.cz, Tel.: 387 775 214
Year of Publishing	2012

Number of the records: 1