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Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis
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SYSNO ASEP 0365891 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis Author(s) Cang, X. (US)
Šponer, Jiří (BFU-R) RID, ORCID
Cheatham III, T.E. (US)Number of authors 3 Source Title Journal of the American Chemical Society. - : American Chemical Society - ISSN 0002-7863
Roč. 133, č. 36 (2011), s. 14270-14279Number of pages 10 s. Language eng - English Country US - United States Keywords molecular dynamics ; DNA ; quadruplex Subject RIV BO - Biophysics R&D Projects GA203/09/1476 GA ČR - Czech Science Foundation (CSF) LC06030 GA MŠMT - Ministry of Education, Youth and Sports (MEYS) IAA400040802 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) GAP208/11/1822 GA ČR - Czech Science Foundation (CSF) CEZ AV0Z50040507 - BFU-R (2005-2011) AV0Z50040702 - BFU-R (2007-2013) UT WOS 000295193700032 DOI 10.1021/ja107805r Annotation The lengths of G-tracts and their connecting loop sequences determine G-quadruplex folding and stability. Here, single-loop G-quadruplexes were investigated using explicit solvent molecular dynamics (MD) simulations to characterize the effect of loop length, loop sequence, and G-tract length on the folding topologies and stability of G-quadruplexes. Workplace Institute of Biophysics Contact Jana Poláková, polakova@ibp.cz, Tel.: 541 517 244 Year of Publishing 2012
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