Number of the records: 1
Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems
- 1.
SYSNO ASEP 0359469 Document Type M - Monograph Chapter R&D Document Type Monograph Chapter Title Scaling and Integration of Kinetic Models of Photosynthesis.Towards Comprehensive E-Photosynthesis Author(s) Nedbal, Ladislav (UEK-B)
Červený, Jan (UEK-B) RID, ORCID, SAI
Schmidt, H. (DE)Source Title Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems. - Dordrecht : Springer, 2009 / Laisk A. ; Nedbal L. ; Govindjee - ISBN 978-1-4020-9236-7 Pages s. 17-28 Number of pages 13 s. Number of pages 508 Language eng - English Country NL - Netherlands Keywords complexity ; mathematical models ; photosynthesis ; dimensionality reduction ; silico Subject RIV EF - Botanics CEZ AV0Z60870520 - UEK-B (2005-2011) DOI 10.1007/978-1-4020-9237-4 Annotation Photosynthesis as it occurs in a natural environment reflects not only the primary biophysical and biochemical reactions but also a network of regulatory interactions that act across timescales and spatial boundaries. Modeling such a tightly regulated biosystem is feasible when the model is reduced to describe only a rather particular experimental situation such as fluorescence response to a single turnover light flash or the dynamics around the steady-state of CB cycle. In this chapter we propose the Comprehensive Modeling Space (CMS) where the partial photosynthesis models would be shared by means of SBML language, which is the de-facto standard for the formal representation of biochemical models. Models validity is defined by an extension of MIRIAM standard. The hierarchy and connectivity of the partial models within the CMS is determined by rigorous dimensionality reduction techniques. We exemplify the principles of the comprehensive modeling approach based on partial models of the PS II. Workplace Global Change Research Institute Contact Nikola Šviková, svikova.n@czechglobe.cz, Tel.: 511 192 268 Year of Publishing 2012
Number of the records: 1