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Residues flanking the ARK(me3)T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations

  1. 1.
    SYSNO ASEP0542005
    Document TypeJ - Journal Article
    R&D Document TypeJournal Article
    Subsidiary JČlánek ve WOS
    TitleResidues flanking the ARK(me3)T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations
    Author(s) Pokorná, Pavlína (BFU-R) ORCID
    Krepl, Miroslav (BFU-R) ORCID, RID
    Šponer, Jiří (BFU-R) RID, ORCID
    Number of authors3
    Article number129771
    Source TitleBiochimica et Biophysica Acta-General Subjects. - : Elsevier - ISSN 0304-4165
    Roč. 1865, č. 1 (2021)
    Number of pages12 s.
    Publication formOnline - E
    Languageeng - English
    CountryNL - Netherlands
    Keywordsheterochromatin protein-1 hp1 ; force-field parameters ; histone h3 ; lysine 9 ; secondary structure ; structural basis
    Subject RIVCE - Biochemistry
    OECD categoryBiochemistry and molecular biology
    R&D ProjectsGA18-07384S GA ČR - Czech Science Foundation (CSF)
    Method of publishingLimited access
    Institutional supportBFU-R - RVO:68081707
    UT WOS000594131800032
    EID SCOPUS85094907445
    DOI https://doi.org/10.1016/j.bbagen.2020.129771
    AnnotationBackground: The chromodomain (CD) of HP1 proteins is an established H3K9(me3) reader that also binds H1, EHMT2 and H3K23 lysine-methylated targets. Structural experiments have provided atomistic pictures of its recognition of the conserved ARK(me3)S/T motif, but structural dynamics' contribution to the recognition may have been masked by ensemble averaging.
    WorkplaceInstitute of Biophysics
    ContactJana Poláková, polakova@ibp.cz, Tel.: 541 517 244
    Year of Publishing2022
    Electronic addresshttps://www.sciencedirect.com/science/article/pii/S0304416520302828?via%3Dihub
Number of the records: 1  

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